Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I17
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    77   6e-15
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    77   6e-15
U23484-7|ABB88232.1|  738|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    27   6.5  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
 Frame = +2

Query: 257 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 433
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 434 DLDRI 448
           DLDRI
Sbjct: 131 DLDRI 135



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 28/49 (57%), Positives = 36/49 (73%)
 Frame = +3

Query: 48  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 194
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DP
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51



 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 199 WFYVRCAAILRHIYIR 246
           WFY R A++ RH+Y R
Sbjct: 53  WFYTRAASLARHLYFR 68


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
 Frame = +2

Query: 257 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 433
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 434 DLDRI 448
           DLDRI
Sbjct: 131 DLDRI 135



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 28/49 (57%), Positives = 36/49 (73%)
 Frame = +3

Query: 48  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 194
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DP
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51



 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 199 WFYVRCAAILRHIYIR 246
           WFY R A++ RH+Y R
Sbjct: 53  WFYTRAASLARHLYFR 68


>U23484-7|ABB88232.1|  738|Caenorhabditis elegans Hypothetical
           protein EEED8.10a protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +3

Query: 12  RSFFRLSTQGKMRS-VTVKDVEQDKIVKTVAAHLKKTGKV----KVPEHMDLVKTARFKE 176
           +SFF  S  GK+ S +  ++ ++  +  T+  H +  G      K  EH D  K A  +E
Sbjct: 129 QSFF--SQYGKITSCILPREEKKTSVFGTLPKHSRNCGTATITFKKSEHADRAKNANPEE 186

Query: 177 LAPYDPXLVLCA 212
           L  YD  +V+ A
Sbjct: 187 LKFYDQVMVVSA 198


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 231 SYLHSLTXLESRLSPRSLVGANVMEL 308
           S  H    + SRLSPRS +G N+ E+
Sbjct: 67  STFHPEKYISSRLSPRSRLGNNIFEM 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,667,767
Number of Sequences: 27780
Number of extensions: 229743
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)