Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I17
(537 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 76 1e-14
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 76 1e-14
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 73 9e-14
At3g54950.1 68416.m06092 patatin-related low similarity to patat... 30 1.1
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.5
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 29 2.6
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi... 27 6.0
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.9
At2g38770.1 68415.m04760 expressed protein 27 7.9
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 27 7.9
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +2
Query: 257 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 436
GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RD
Sbjct: 72 GVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRD 131
Query: 437 LDRI 448
LD++
Sbjct: 132 LDQV 135
Score = 61.7 bits (143), Expect = 3e-10
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = +3
Query: 57 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 194
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDP
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDP 51
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +2
Query: 257 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 436
GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RD
Sbjct: 72 GVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRD 131
Query: 437 LDRI 448
LD++
Sbjct: 132 LDQV 135
Score = 61.3 bits (142), Expect = 4e-10
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = +3
Query: 57 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 194
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDP
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDP 51
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 73.3 bits (172), Expect = 9e-14
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = +2
Query: 257 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 436
GV +I+GG KRNG P HFC+SSG +AR LQ L+ + +V+ GGR +T+ G+RD
Sbjct: 72 GVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRD 131
Query: 437 LDRI 448
LD++
Sbjct: 132 LDQV 135
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +3
Query: 57 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 194
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDP
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDP 51
>At3g54950.1 68416.m06092 patatin-related low similarity to patatin
[GI:169500][Solanum tuberosum]; contains Patatin domain
PF01734
Length = 488
Score = 29.9 bits (64), Expect = 1.1
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 238 KYDEGWQHNAHRTNXGSYG-ASSLKRAVFTRS-MCSGTLTLPVFFK*AATVLTILSCSTS 65
K D+ WQ R G YG A LKR + T S CSGT L K + + LT+
Sbjct: 167 KADDTWQFLT-RNAKGLYGGAGILKRVLRTGSGCCSGTAKLKKVMKESFSELTLKD---- 221
Query: 64 FTVTERILPCVD 29
T+ ++PC D
Sbjct: 222 -TLKPVLIPCYD 232
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 404 HRPELSQQASMPPTIAKPCVQYCLM 330
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 320 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 448
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 633
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 245 AHLXGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVE--KVQDGGRILT 418
A G + ++F G R+G PSHF +S A + LE K V ++ G +++
Sbjct: 238 ARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA 297
Query: 419 TQGRRDLD 442
G LD
Sbjct: 298 FAGNTLLD 305
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 66 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 182
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At2g38770.1 68415.m04760 expressed protein
Length = 1509
Score = 27.1 bits (57), Expect = 7.9
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 5/137 (3%)
Frame = +3
Query: 51 SVTVKDVEQDKIVKTVAAHLKKTG-----KVKVPEHMDLVKTARFKELAPYDPXLVLCAL 215
S+T+ +++QD++ K KTG K PE + + K + P + +
Sbjct: 44 SITLSEIQQDRLTKIAEESWIKTGGKLPEKPFDPEVVKEIYVTELKVTSGRKPVPLQRVM 103
Query: 216 CCHPSSYLHSLTXLESRLSPRSLVGANVMELHLHISAGHQAVLHARLCNRWRH*SLLRKF 395
S YL + L P + +VM + L I+ + + A +C R L +KF
Sbjct: 104 ILEVSQYLEN--YLWPNFDPETATFEHVMSMILMINEKFRENVAAWICFHDRD-DLFKKF 160
Query: 396 RTVVAFSPHKVDETLTE 446
V D T+ E
Sbjct: 161 LQKVLRLKEGRDLTIAE 177
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 444 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR 289
+S SRL C+ + + NA +D +DL+K G +PL L+
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLK 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,924,571
Number of Sequences: 28952
Number of extensions: 210825
Number of successful extensions: 494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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