Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I14
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    86   4e-18
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    50   2e-07
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    33   0.035
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    28   1.0  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   3.1  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   5.4  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   9.4  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 38/46 (82%), Positives = 42/46 (91%)
 Frame = +2

Query: 86  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 223
           MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+
Sbjct: 1   MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASL 46



 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +1

Query: 394 FKSIEGSYVYKGGKISXVPVDXKEALASDLMGMFXKRRFRNFLIYV 531
           FK I GSYVY+ G+I+ VP +  EAL S LM +F KRR + FL +V
Sbjct: 101 FKQIAGSYVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWV 146



 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 276 ETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVT 377
           E+ GR RDW VDL+PKFLMANG L  +LI+T VT
Sbjct: 63  ESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVT 96


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +2

Query: 98  YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 226
           YDVI++GT L+  ILS  LS + ++VLHID N +YG    S+T
Sbjct: 7   YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLT 49


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 32.7 bits (71), Expect = 0.035
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 92  EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 193
           ++ D+I++G G+  C L   L   G+KVL ++R+
Sbjct: 4   QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 264 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTP 380
           P P +  G  + + V     F++ANG L+K LIH  + P
Sbjct: 14  PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSIGP 51


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 153 CRFLGRRFCTSIAISTTVVNLRQL 224
           CR L R+F  ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 107 IVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 214
           IV+G GL     +  +   G  VL +D+N  +GG S
Sbjct: 42  IVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGGNS 77


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 192 LRSMCKTFFPETDNMPLKIHSFKPVPRTITSYSSS 88
           LRS  +  F  T  +P+ +    P P T  S++SS
Sbjct: 195 LRSSIRHIFLVTMGLPVDLDELLPTPSTQGSFNSS 229


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 180 TSIAISTTVVNLRQLPRLEELFGXXFNAPAPDETYG 287
           T I I   +  L+Q  R  E+F   +++    +TYG
Sbjct: 703 TLINIGNCLAELKQFSRAIEVFETVYSSTGESDTYG 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,127
Number of Sequences: 5004
Number of extensions: 40577
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)