Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I14
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         83   1e-16
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)               59   2e-09
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   57   1e-08
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.26 
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     27   9.6  
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 35/48 (72%), Positives = 43/48 (89%)
 Frame = +2

Query: 86  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITP 229
           MD EYD +VLGTGLKEC+LSG+LS++ KKVLH+DRNKYYGG+ AS+ P
Sbjct: 1   MDAEYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCASLHP 48



 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = +1

Query: 391 SFKSIEGSYVYKGGKISXVPVDXKEALASDLMGMFXKRRFRNFLIY 528
           +FK IEGS+VY+GG +  VP + KEAL S LMG+F KRRFRNFLI+
Sbjct: 102 NFKQIEGSFVYRGGSVHKVPANEKEALNSSLMGIFEKRRFRNFLIF 147



 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 30/55 (54%), Positives = 39/55 (70%)
 Frame = +3

Query: 210 NLRQLPRLEELFGXXFNAPAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 374
           +L  L +L E FG       P ++ G+ RD+NVDLIPKFLMA+G LVK+L+HTGV
Sbjct: 45  SLHPLNQLYETFG---RTDFPGDSLGKPRDYNVDLIPKFLMADGTLVKILVHTGV 96


>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = +2

Query: 131 ECILSGMLSVSGKKVLHIDRNKYYGGESASITP 229
           ECILSG LSV+GKKVLH+D  K+YGGE+AS+TP
Sbjct: 19  ECILSGALSVAGKKVLHMDSQKFYGGETASLTP 51



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +3

Query: 210 NLRQLPRLEELFGXXFNAPAPDETYGRGRDWNVDLIPKFLMANGL 344
           +L  L +L + F         ++ +GR RDWNVDL+PKF+MA G+
Sbjct: 48  SLTPLSQLFDKFNRSMPKEEIEKRFGRERDWNVDLVPKFIMAGGI 92


>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +2

Query: 95  EYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 226
           EYD IVLGTGL E +++  LS  G KVLH+DRN YY  + AS T
Sbjct: 7   EYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFT 50



 Score = 30.7 bits (66), Expect = 0.78
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 294 RDWNVDLIPKFLMANGLLVKLLIHTGVT 377
           R +N+DL PK L++ G LV+ LI   ++
Sbjct: 323 RQFNIDLAPKLLLSRGALVESLISANIS 350


>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +2

Query: 92  EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 208
           +E D +V+G+G+     + +L+ +GKK+L ++++   GG
Sbjct: 84  DEVDAVVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGG 122


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 115 GNRLKRMYFKRHVVGFWEEGFAHRSQ*VLRW*ICVNY 225
           GNR  R+  K ++   +E+GF        RW IC  +
Sbjct: 80  GNRSVRVILKTYLCVSYEQGFCKSGNSCTRWHICKGF 116


>SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 195 LLRSMCKTFFPETDNMPLKIHSFKPVPRTITSYS 94
           L+   C+   PETDN PL ++   P+   I +YS
Sbjct: 23  LIIDSCRIRLPETDNRPLYVNRL-PLGNNIFAYS 55


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 382 PGVTPV*ISNLTSNPLAIRNLGIKSTFQSRPRP 284
           PG TP     + S+ L  RN+  +STF S  RP
Sbjct: 627 PGSTPNSNIPVPSSRLGARNMAARSTFHSGERP 659


>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 95  EYDVIVLGTGLKECILSGMLSVSGK-KVLHID 187
           +YD I+ G G   CIL+  L+  G+ +VL ++
Sbjct: 10  DYDFIIAGGGTAGCILANRLTADGRHRVLMLE 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,553,667
Number of Sequences: 59808
Number of extensions: 301014
Number of successful extensions: 581
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)