Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I14
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical p...    98   4e-21
Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical p...    98   4e-21
U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.       98   4e-21
AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical ...    57   7e-09
AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical ...    57   7e-09
AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical ...    30   0.91 
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    27   8.5  

>Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10b protein.
          Length = 459

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2

Query: 86  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITP 229
           MDEEYD IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TP
Sbjct: 1   MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTP 48



 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
 Frame = +3

Query: 222 LPRLEELFGXXFNAPA--PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVT 377
           L  LE+L+   F+ P   P +  GRGRDWNVDLIPKFLMANG LVKLLIHTGVT
Sbjct: 46  LTPLEQLY-EKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVT 98



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 32/47 (68%), Positives = 37/47 (78%)
 Frame = +1

Query: 394 FKSIEGSYVYKGGKISXVPVDXKEALASDLMGMFXKRRFRNFLIYVQ 534
           FKSIE S+V KGGKI  VP D  EALA+ LMGMF KRRF+ FL++VQ
Sbjct: 103 FKSIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQ 149


>Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10a protein.
          Length = 444

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2

Query: 86  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITP 229
           MDEEYD IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TP
Sbjct: 1   MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTP 48



 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
 Frame = +3

Query: 222 LPRLEELFGXXFNAPA--PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVT 377
           L  LE+L+   F+ P   P +  GRGRDWNVDLIPKFLMANG LVKLLIHTGVT
Sbjct: 46  LTPLEQLY-EKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVT 98



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 32/47 (68%), Positives = 37/47 (78%)
 Frame = +1

Query: 394 FKSIEGSYVYKGGKISXVPVDXKEALASDLMGMFXKRRFRNFLIYVQ 534
           FKSIE S+V KGGKI  VP D  EALA+ LMGMF KRRF+ FL++VQ
Sbjct: 103 FKSIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQ 149


>U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.
          Length = 444

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = +2

Query: 86  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITP 229
           MDEEYD IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TP
Sbjct: 1   MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTP 48



 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
 Frame = +3

Query: 222 LPRLEELFGXXFNAPA--PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVT 377
           L  LE+L+   F+ P   P +  GRGRDWNVDLIPKFLMANG LVKLLIHTGVT
Sbjct: 46  LTPLEQLY-EKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVT 98



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 32/47 (68%), Positives = 37/47 (78%)
 Frame = +1

Query: 394 FKSIEGSYVYKGGKISXVPVDXKEALASDLMGMFXKRRFRNFLIYVQ 534
           FKSIE S+V KGGKI  VP D  EALA+ LMGMF KRRF+ FL++VQ
Sbjct: 103 FKSIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQ 149


>AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical
           protein Y67D2.1b protein.
          Length = 353

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 25/47 (53%), Positives = 34/47 (72%)
 Frame = +2

Query: 86  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 226
           + E  DV+VLGTGL E IL+   + +G  VLH+DRN+YYGG+ +S T
Sbjct: 5   LPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51



 Score = 30.3 bits (65), Expect = 0.91
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 294 RDWNVDLIPKFLMANGLLVKLLIHTGVTPGTWEF*VHRRKLC 419
           R +++DL+PK L++ G +V+ L  + V+    EF +  R+LC
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYA-EFKLVNRQLC 162


>AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical
           protein Y67D2.1a protein.
          Length = 510

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 25/47 (53%), Positives = 34/47 (72%)
 Frame = +2

Query: 86  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 226
           + E  DV+VLGTGL E IL+   + +G  VLH+DRN+YYGG+ +S T
Sbjct: 5   LPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51



 Score = 30.3 bits (65), Expect = 0.91
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 294 RDWNVDLIPKFLMANGLLVKLLIHTGVTPGTWEF*VHRRKLC 419
           R +++DL+PK L++ G +V+ L  + V+    EF +  R+LC
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYA-EFKLVNRQLC 162


>AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical
           protein F37C4.6 protein.
          Length = 544

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 92  EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 220
           + YD I++G G      +  L+ +GKKV  ++R    GG + +
Sbjct: 13  QSYDAIIIGGGHNGLTAAAYLTKAGKKVCVLERRHVVGGAAVT 55


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 273  DETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTP 380
            D  Y + + +NVD I ++   NG+ + ++I T + P
Sbjct: 943  DLNYLKSKKFNVDKIKQYRHHNGIPIDMIIGTDIIP 978


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 273  DETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTP 380
            D  Y + + +NVD I ++   NG+ + ++I T + P
Sbjct: 943  DLNYLKSKKFNVDKIKQYRHHNGIPIDMIIGTDIIP 978


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,456,794
Number of Sequences: 27780
Number of extensions: 230061
Number of successful extensions: 476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)