Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I14
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 213  LRQLPRLEELFG 248
            LRQ PRL+EL G
Sbjct: 1291 LRQSPRLKELVG 1302


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +2

Query: 14  LSSDIFDISSAVVG*IELIFYTIIMDEEYDVIVLGTG 124
           LSS+  D+   V    +   +  ++D + +++ LG G
Sbjct: 277 LSSEATDLRMGVASFCKAFPWHFVVDRQLELVQLGVG 313


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 338  WIASQIAYSHGRHPGYLGVLSPSKEVMFTKVEK 436
            W++  ++ ++G   GY  ++ PS   ++TK  K
Sbjct: 1102 WMSPPLSAANGVITGYKVIVIPSGGGIYTKDTK 1134


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 134 ILLSLFPGQSHRILHPL**CKRSTRF 57
           IL +  PG+  R   P   CK S RF
Sbjct: 404 ILCACCPGRVRRRYQPAFRCKPSQRF 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,398
Number of Sequences: 438
Number of extensions: 3023
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)