Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I14
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i... 85 3e-17
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i... 85 3e-17
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ... 62 2e-10
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 51 4e-07
At4g19380.1 68417.m02853 alcohol oxidase-related similar to long... 33 0.12
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ... 29 2.6
At5g24155.1 68418.m02841 squalene monooxygenase, putative / squa... 28 3.4
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long... 28 3.4
At1g79020.1 68414.m09214 transcription factor-related similar to... 28 3.4
At4g31650.1 68417.m04495 transcriptional factor B3 family protei... 27 7.9
>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
identical to Rab GDP dissociation inhibitor AtGDI2
[Arabidopsis thaliana] GI:2446981
Length = 444
Score = 85.0 bits (201), Expect = 3e-17
Identities = 38/46 (82%), Positives = 42/46 (91%)
Frame = +2
Query: 86 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 223
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSL 46
Score = 54.8 bits (126), Expect = 3e-08
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +1
Query: 391 SFKSIEGSYVYKGGKISXVPVDXKEALASDLMGMFXKRRFRNFLIYVQ 534
SFK+++GSYV+ GK+ VP EAL S LMG+F KRR F +VQ
Sbjct: 100 SFKAVDGSYVFVKGKVQKVPATPMEALKSSLMGIFEKRRAGKFFSFVQ 147
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3
Query: 276 ETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVT 377
E G RD+NVD++PKF+M NG LV+ LIHT VT
Sbjct: 63 EHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVT 96
>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
identical to GDP dissociation inhibitor [Arabidopsis
thaliana] GI:1655424
Length = 445
Score = 85.0 bits (201), Expect = 3e-17
Identities = 38/46 (82%), Positives = 42/46 (91%)
Frame = +2
Query: 86 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 223
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSL 46
Score = 56.0 bits (129), Expect = 1e-08
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +1
Query: 391 SFKSIEGSYVYKGGKISXVPVDXKEALASDLMGMFXKRRFRNFLIYVQ 534
SFK+++GSYV+ GK+ VP EAL S LMG+F KRR F YVQ
Sbjct: 100 SFKAVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKFFSYVQ 147
Score = 51.2 bits (117), Expect = 4e-07
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +3
Query: 198 TTVVNLRQLPRLEELFGXXFNAPAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVT 377
+T +NL QL + F APA G RD+NVD++PKF+MANG LV++LIHT VT
Sbjct: 43 STSLNLNQLWKK---FRGEEKAPAH---LGSSRDYNVDMMPKFMMANGKLVRVLIHTDVT 96
>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
strong similarity to GDP dissociation inhibitor protein
OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
PF00996: GDP dissociation inhibitor
Length = 365
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/48 (60%), Positives = 35/48 (72%)
Frame = +1
Query: 391 SFKSIEGSYVYKGGKISXVPVDXKEALASDLMGMFXKRRFRNFLIYVQ 534
+FK+++GS+VYK GKI VP EAL S LMG+F KRR R F IYVQ
Sbjct: 20 NFKAVDGSFVYKKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQ 67
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 330 MANGLLVKLLIHTGVT 377
MANGLLV+ LIHT VT
Sbjct: 1 MANGLLVQTLIHTDVT 16
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 51.2 bits (117), Expect = 4e-07
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +2
Query: 59 IELIFYTIIMDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 226
I++ Y + YD+IV+GTG+ E +L+ S SG VLH+D N +YG AS++
Sbjct: 2 IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLS 57
>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 726
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 83 IMDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 223
+M + D +V+G+G + +G+L+ +G KVL I+ YY S+
Sbjct: 219 VMKIQCDAVVVGSGSGGGVAAGVLAKAGYKVLVIESGNYYARSKLSL 265
>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
carotenoid isomerase from Lycopersicon esculentum
[gi:19550437]; contains Pfam profile: PF02032 Phytoene
dehydrogenase related enzyme
Length = 595
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 98 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 214
YD IV+G+G+ + + L+V +VL +++ GG S
Sbjct: 78 YDAIVIGSGIGGLVAATQLAVKEARVLVLEKYLIPGGSS 116
>At5g24155.1 68418.m02841 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2)
Length = 121
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 89 DEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 193
D DVI++G G+ L+ L+ G++VL I+R+
Sbjct: 45 DSAADVIIVGAGVGGSALAYSLAKDGRRVLAIERD 79
>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 746
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 101 DVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 202
DV+V+G+G + + +L+ SG KV+ +++ Y+
Sbjct: 234 DVVVVGSGSGGGVAASVLAKSGLKVVVLEKGSYF 267
>At1g79020.1 68414.m09214 transcription factor-related similar to
enhancer of polycomb (GI:3757890) [Drosophila
melanogaster]; similar to enhancer of polycomb
(GI:11907923) [Homo sapiens]
Length = 453
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 534 LNVD*EVAETPLXKHAHKIRRKSFFXIDRYXGDFS-TFVNITSF 406
+ VD EVA P K A +I F +D Y D+S TF S+
Sbjct: 47 VEVDNEVAPVPSKKPASEIPTPQFVIVDTYERDYSPTFGQPASY 90
>At4g31650.1 68417.m04495 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 493
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 77 TIIMDEEYDVIVLGTGLKE 133
T++MD+ Y +VLG+GL+E
Sbjct: 439 TLLMDKRYTRMVLGSGLRE 457
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,755,337
Number of Sequences: 28952
Number of extensions: 213940
Number of successful extensions: 481
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -