Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I10
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 145 2e-35
12_01_0323 - 2459854-2460306 144 5e-35
11_01_0317 - 2365493-2365786,2365825-2365953 108 3e-24
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 28 5.3
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 7.1
02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579 27 7.1
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 27 9.3
>01_01_0263 + 2136858-2137331
Length = 157
Score = 145 bits (351), Expect = 2e-35
Identities = 69/103 (66%), Positives = 88/103 (85%)
Frame = +3
Query: 159 SKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGAT 338
S ELR K+NV+S+PIRKDDEVQVVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T
Sbjct: 35 SSELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93
Query: 339 AYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 467
VGIHPSK V+ KLK++KDRKAILDR+A+GR A K KGK+
Sbjct: 94 VNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +2
Query: 56 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 157
MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34
>12_01_0323 - 2459854-2460306
Length = 150
Score = 144 bits (348), Expect = 5e-35
Identities = 69/103 (66%), Positives = 87/103 (84%)
Frame = +3
Query: 159 SKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGAT 338
S ELR K+NV+S+PIRKDDEVQVVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T
Sbjct: 35 STELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93
Query: 339 AYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 467
VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK+
Sbjct: 94 VNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +2
Query: 56 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 157
MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 108 bits (259), Expect = 3e-24
Identities = 52/81 (64%), Positives = 67/81 (82%)
Frame = +3
Query: 225 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 404
VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRK
Sbjct: 44 VVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRK 102
Query: 405 AILDRRAKGRLAALGKDKGKY 467
AILDR+A GR A K KGK+
Sbjct: 103 AILDRKASGR--AADKAKGKF 121
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +2
Query: 56 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 157
MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +2
Query: 296 IH*EDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRG 475
+H S+ +G C H+ K C C + E + Q+ R + Q ++ I R
Sbjct: 463 LHENLSQVEGHDIALCCNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRS 522
Query: 476 NCHSH 490
HS+
Sbjct: 523 AVHSN 527
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 165 ELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERI 311
E KF + P K D +Q+V + + QQ + V K+F +YI +
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYISSL 1326
>02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579
Length = 339
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -1
Query: 401 AVFIHLQLDNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNL 222
A + LQL TL R + + T+ F + LN + LF + +H ++ LAF +YN
Sbjct: 68 AAVVSLQLWTATLLRDASWVKILTVAYFFGSFLN--HNLF-LAIHELSHNLAFTTPSYNR 124
Query: 221 NFIVFAN 201
+FAN
Sbjct: 125 WLGIFAN 131
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 195 MPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIE 305
M +R D VQV+ G KG +VG+V ++++ V ++
Sbjct: 93 MHVRIGDTVQVIAGREKG-KVGEVTRLFKHNSTVIVK 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,738
Number of Sequences: 37544
Number of extensions: 287765
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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