Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I10
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   144   3e-35
At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           135   2e-32
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    29   2.6  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   5.9  
At1g50500.1 68414.m05664 membrane trafficking VPS53 family prote...    27   5.9  

>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  144 bits (349), Expect = 3e-35
 Identities = 69/103 (66%), Positives = 88/103 (85%)
 Frame = +3

Query: 153 PXSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 332
           P S +LRQK+NV+SMPIRKDDEVQ+VRG YKG++ GKV+QVYR+K+V++IERI REK NG
Sbjct: 33  PLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNG 91

Query: 333 ATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 461
            T  VGI PSK VI KL+++KDRK++L+R+AKGR AA  K+KG
Sbjct: 92  TTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR-AAADKEKG 133



 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +2

Query: 56  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 157
           MK+N +VTSSRRKNRK HF+A S  RRV+MSSPL
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPL 34


>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  135 bits (327), Expect = 2e-32
 Identities = 65/103 (63%), Positives = 86/103 (83%)
 Frame = +3

Query: 153 PXSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 332
           P SK+LR K NV+SMPIRKDDEVQVVRG +KG++ GKVMQVYR+K+V++IERI REK NG
Sbjct: 33  PLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGRE-GKVMQVYRRKWVIHIERITREKVNG 91

Query: 333 ATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 461
           +T  VG++ S  +I KL+++KDRK++L+R+A GR AA  K+KG
Sbjct: 92  STVNVGVNASNVMITKLRLDKDRKSLLERKANGR-AAADKEKG 133



 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 27/34 (79%), Positives = 31/34 (91%)
 Frame = +2

Query: 56  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 157
           MKFN +V+SSRRKNRK HF+APS +RRVLMSSPL
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPL 34


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 40  GEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPXLRN*DKNSM 186
           GEE +  V Q  +F K    E  F+  + Y+A+  ++     N DK  +
Sbjct: 590 GEEEETHVGQIVEFFKTTDGESYFRVQWFYRATDTIMERQATNHDKRRL 638


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 81   PQEGKTGRGISVLLHI 128
            P +G TG GISVLLH+
Sbjct: 1408 PFQGSTGSGISVLLHL 1423


>At1g50500.1 68414.m05664 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 798

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 162 KELRQKFNVKSMPIR--KDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREK 323
           KEL +KF    +P +  +DD  ++       Q + K+ + Y KKF    E  + EK
Sbjct: 315 KELEKKFG-GGVPTKDIEDDIEEIGTWEDNSQNISKIRKKYEKKFAASQETEENEK 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,140
Number of Sequences: 28952
Number of extensions: 237668
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)