Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I09
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 148 7e-37
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 147 9e-37
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 142 3e-35
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 28 1.1
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 3.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.5
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 4.5
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 4.5
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 6.0
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 6.0
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 6.0
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 148 bits (358), Expect = 7e-37
Identities = 68/127 (53%), Positives = 84/127 (66%)
Frame = +2
Query: 185 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 364
NKLK +++LRK C NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G P
Sbjct: 51 NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIP 110
Query: 365 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 544
PPFD LKPGR YC VGRLS E+GWKY D+V KLE++RK K+
Sbjct: 111 PPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AF 168
Query: 545 YEKKLKR 565
Y+ KL +
Sbjct: 169 YQAKLAK 175
Score = 72.5 bits (170), Expect = 4e-14
Identities = 32/44 (72%), Positives = 39/44 (88%)
Frame = +1
Query: 49 KAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFF 180
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFF 49
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 147 bits (357), Expect = 9e-37
Identities = 68/127 (53%), Positives = 84/127 (66%)
Frame = +2
Query: 185 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 364
NKLK +++LRK C NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G P
Sbjct: 51 NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIP 110
Query: 365 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 544
PPFD LKPGR YC VGRLS E+GWKY D+V KLE++RK K+
Sbjct: 111 PPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AF 168
Query: 545 YEKKLKR 565
Y+ KL +
Sbjct: 169 YQAKLAK 175
Score = 72.5 bits (170), Expect = 4e-14
Identities = 32/44 (72%), Positives = 39/44 (88%)
Frame = +1
Query: 49 KAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFF 180
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFF 49
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 142 bits (344), Expect = 3e-35
Identities = 62/115 (53%), Positives = 79/115 (68%)
Frame = +2
Query: 185 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 364
NKLK +++LRK C NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G P
Sbjct: 51 NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIP 110
Query: 365 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 529
PPFD LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 111 PPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
Score = 69.7 bits (163), Expect = 3e-13
Identities = 29/44 (65%), Positives = 38/44 (86%)
Frame = +1
Query: 49 KAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFF 180
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FF
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFF 49
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 76 HLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFF 180
H L + AV K + G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 342 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 256
S L AFLP+ LC +IPL + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 363 GHPSYVRSLLRAFLPRSVLCGIIP 292
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 159 DLFAANHNNFVPFEKXLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 22
D+ A N + L RQ QQM T +YGL+ KAR N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 455 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKR 565
R S E K D K E+KR+ K K+ EKK K+
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKK 464
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 173 TSLVNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 301
+S N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1319 SSCGNRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.4 bits (53), Expect = 6.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 51 LIAKARHFHNETEKPTF 1
++ RH HNET++P+F
Sbjct: 498 IVCYRRHGHNETDQPSF 514
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 142 VRCEQINISGNFFSEQTQAYVIPA*EVQRESCSW 243
VRC +++SGN+ + V+ EV C W
Sbjct: 382 VRCLSVHVSGNWLASGGDDGVLRIWEVMTGRCVW 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,323
Number of Sequences: 5004
Number of extensions: 45944
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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