Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I09
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 151 5e-37
07_01_0071 - 522920-523063,524125-524212,524289-524677 149 1e-36
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 111 5e-25
11_04_0056 + 12942802-12942920,12943022-12943115 58 4e-09
04_03_0232 - 13049649-13052807 31 0.66
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 29 2.0
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 4.6
04_03_0148 + 11869929-11869968,11870000-11870421 28 6.1
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 151 bits (365), Expect = 5e-37
Identities = 68/135 (50%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = +2
Query: 155 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 331
+ I ++ LV K+K + FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ A
Sbjct: 44 EEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAA 103
Query: 332 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 511
L RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y D +R+LE+
Sbjct: 104 LARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEE 163
Query: 512 KRKGKAVKRVAYEKK 556
KRK KA +VAY+++
Sbjct: 164 KRKEKA--KVAYDRR 176
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +1
Query: 22 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFFSEQ 189
+V +G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG ++
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQK 56
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 149 bits (362), Expect = 1e-36
Identities = 67/128 (52%), Positives = 88/128 (68%)
Frame = +2
Query: 188 KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPP 367
K+K + FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PP
Sbjct: 56 KMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPP 115
Query: 368 PFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY 547
P+D L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAY
Sbjct: 116 PYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAY 173
Query: 548 EKKLKRIT 571
E++ K++T
Sbjct: 174 ERR-KQLT 180
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/56 (46%), Positives = 40/56 (71%)
Frame = +1
Query: 22 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFFSEQ 189
+V +G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG ++
Sbjct: 1 MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQK 56
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 111 bits (266), Expect = 5e-25
Identities = 46/92 (50%), Positives = 60/92 (65%)
Frame = +2
Query: 224 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 403
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 404 XXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVR 499
L+PG YC +G+LS E+GW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 317 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 484
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 527 PCPSSCLQAYEQHHGISIQFHGTVCLH 447
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 257 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 376
R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 619 RIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 224 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 370
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 62 SMAVVICWAVWRQSSPRXF 118
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,678
Number of Sequences: 37544
Number of extensions: 329382
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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