Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I09
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             32   0.39 
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)                 29   3.6  
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)                 29   3.6  
SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 28   6.3  
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)           28   6.3  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +2

Query: 296 MIPHKTERGKNALRRLRTYDGCPPPFD 376
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 62  SMAVVICWAVWRQSSPRXFSKGTKLLWFAANKSISLA 172
           SM+V +C ++W  + P  F    +L+W+  + S+S++
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWYNTHPSVSVS 301


>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
          Length = 622

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 428 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 544
           PG   C VG+L H   W    + R L   R+  + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445


>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
          Length = 1266

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 428 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 544
           PG   C VG+L H   W    + R L   R+  + ++ A
Sbjct: 866 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 904


>SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 519

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 243 PRAGFTLHLLRRNDISLSLFTKEVARDIDLFAANHNNFVP-FEKXLGDDC 97
           P    ++H L  +D++ SL TKE     +LF    ++  P   K  GD C
Sbjct: 93  PEEQHSIHELLLDDLAKSLDTKERHASFELFQLRRDDIKPHLNKEYGDLC 142


>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
          Length = 676

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 452 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 345
           +H S + +V  ++H+E +A  H   Y R +  H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002,108
Number of Sequences: 59808
Number of extensions: 369771
Number of successful extensions: 1644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)