Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I09
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   154   5e-38
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   154   5e-38
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    30   1.4  
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  154 bits (373), Expect = 5e-38
 Identities = 72/149 (48%), Positives = 95/149 (63%)
 Frame = +2

Query: 122 KGTKLLWFAANKSISLATSLVNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 301
           +G K++   A + +       +KLK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+
Sbjct: 30  QGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGML 89

Query: 302 PHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 481
           PHKT RG  AL+ LR Y+G P  +              F L+P R +C VGRLSHE+GW+
Sbjct: 90  PHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSASRFRLQPRRKFCVVGRLSHEVGWQ 148

Query: 482 YRDVVRKLEDKRKGKAVKRVAYEKKLKRI 568
           ++DVV KLE KRK K       +KK+ ++
Sbjct: 149 FQDVVAKLEAKRKVKGAAYFEQKKKMDKL 177



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 32/47 (68%), Positives = 42/47 (89%)
 Frame = +1

Query: 37  GFSNKAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNF 177
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNF 48


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  154 bits (373), Expect = 5e-38
 Identities = 72/149 (48%), Positives = 95/149 (63%)
 Frame = +2

Query: 122 KGTKLLWFAANKSISLATSLVNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 301
           +G K++   A + +       +KLK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+
Sbjct: 30  QGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGML 89

Query: 302 PHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 481
           PHKT RG  AL+ LR Y+G P  +              F L+P R +C VGRLSHE+GW+
Sbjct: 90  PHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSASRFRLQPRRKFCVVGRLSHEVGWQ 148

Query: 482 YRDVVRKLEDKRKGKAVKRVAYEKKLKRI 568
           ++DVV KLE KRK K       +KK+ ++
Sbjct: 149 FQDVVAKLEAKRKVKGAAYFEQKKKMDKL 177



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 32/47 (68%), Positives = 42/47 (89%)
 Frame = +1

Query: 37  GFSNKAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNF 177
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNF 48


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 545 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 435
           R+ S   C S  L  +E HHGI +   G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 527 PCPSSCLQAYEQHHGISIQFHGTVCLHD 444
           PCP       E+ HGI++Q  G  CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -1

Query: 491 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 324
           HH      H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435



 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = -1

Query: 503 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 330
           A+  HHG     HG    H S  ++G   +  H       H  G+    G HH +  S  
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594

Query: 329 HSCHA 315
           H  HA
Sbjct: 595 HGHHA 599


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 204 DISLSLFTKEVARDIDLFAANHNNFVPFEKXLGDD 100
           DIS+S  T +  + +   +ANH  F P E    DD
Sbjct: 48  DISVSFLTSQAQKKMRGMSANHGIFDPTEMLTADD 82


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 502 LTNNITVFPSNFMGQSAYMTVITARFQTE 416
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
           protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 31  MTGFSNKAIVIDGRGHLLGRLAAVI 105
           M  FS K+++I G  + +GR AAVI
Sbjct: 1   MARFSGKSVIITGSSNGIGRSAAVI 25


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 437 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKK 556
           +YC  G+ S  H I WKYRD V  ++ K K  A++ R A E K
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAK 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,313
Number of Sequences: 27780
Number of extensions: 268825
Number of successful extensions: 606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)