Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I09
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 143 7e-35
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 142 1e-34
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 142 2e-34
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 141 3e-34
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 28 5.1
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 27 6.8
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si... 27 6.8
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 27 6.8
At5g19400.1 68418.m02312 expressed protein 27 9.0
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 143 bits (347), Expect = 7e-35
Identities = 67/135 (49%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Frame = +2
Query: 155 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 331
+ I L+ LV K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG NA
Sbjct: 44 EEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANA 103
Query: 332 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 511
L RL+ ++G P P+D L+ G YC +GRLS E+GW + D +++LE+
Sbjct: 104 LARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEN 163
Query: 512 KRKGKAVKRVAYEKK 556
KRK +A + YE+K
Sbjct: 164 KRKERA--QAVYERK 176
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +1
Query: 22 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFFSEQ 189
+V +G K +V+D R H+LGRLA+V+AK LL G +VVVRCE+I +SG ++
Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQK 56
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 142 bits (345), Expect = 1e-34
Identities = 67/135 (49%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Frame = +2
Query: 155 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 331
+ I L+ LV K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG A
Sbjct: 44 EEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAA 103
Query: 332 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 511
L RL+ ++G PPP+D L+ G YC +GRLS E+GW + D +++LE
Sbjct: 104 LARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELET 163
Query: 512 KRKGKAVKRVAYEKK 556
KRK ++ +V YE+K
Sbjct: 164 KRKERS--QVMYERK 176
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = +1
Query: 22 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFFSEQ 189
+V +G K +V+DGR H+LGRLA+ AK LL G +VVVVRCE+I +SG ++
Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQK 56
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 142 bits (344), Expect = 2e-34
Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Frame = +2
Query: 155 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 331
+ I L+ LV K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG A
Sbjct: 44 EEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAA 103
Query: 332 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 511
L RL+ Y+G P P+D L+ G YC +GRLS E+GW + D +++LE
Sbjct: 104 LARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELET 163
Query: 512 KRKGKAVKRVAYEKK 556
KRK +A V YE+K
Sbjct: 164 KRKERA--HVVYERK 176
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +1
Query: 22 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFFSEQ 189
+V +G +K +V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG ++
Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQK 56
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 141 bits (341), Expect = 3e-34
Identities = 68/140 (48%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = +2
Query: 155 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 331
+ I L+ LV K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG A
Sbjct: 44 EEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAA 103
Query: 332 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 511
L RL+ ++G PPP+D L+ G YC +GRLS E+GW + D +++LE
Sbjct: 104 LARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEV 163
Query: 512 KRKGKAVKRVAYEKKLKRIT 571
KRK ++ + YE+K K++T
Sbjct: 164 KRKERS--QALYERK-KQLT 180
Score = 60.9 bits (141), Expect = 6e-10
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +1
Query: 22 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFFSEQ 189
+V +G +K +V+D R H+ GRLA++IAK LL G VVVVRCE+I +SG ++
Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQK 56
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 31 MTGFSNKAIVIDGRGHLLGRLAAVIAKXLLEGNKVVVVRCEQINISGNFFSE 186
M G++N IDG H+ G A++ K+ V++ + I++SG E
Sbjct: 286 MLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVRE 337
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 143 FAANKSISLATSLVNKLKLMS--FLRKRCNVNPARGPFHFRAPSKILWKTVRGM 298
FA N+ + L S+ ++ K+ L +R N+ P+R +HF SK L + GM
Sbjct: 278 FACNQLL-LLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGM 330
>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
similar to ribosomal protein L13 GI:170132 from
[Spinacia oleracea]
Length = 241
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 257 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 376
R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 185 RIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 245 PFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 361
P + PS L K + ++P + +G +R +T+DGC
Sbjct: 14 PLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGC 52
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -2
Query: 565 PLKFLFIGNSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRHYNT 386
P F F G + + + F N NF+ ++ T + ++Q + T SSRH++T
Sbjct: 1003 PANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRHFDT 1060
Query: 385 STV 377
+ V
Sbjct: 1061 AHV 1063
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,504,102
Number of Sequences: 28952
Number of extensions: 256414
Number of successful extensions: 731
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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