Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I05
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 166 2e-42
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 166 2e-42
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.59
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.59
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.59
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.59
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 27 1.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 27 3.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.1
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 4.1
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.5
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 7.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.2
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 9.5
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 166 bits (404), Expect = 2e-42
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = +2
Query: 137 IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLH 316
IFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R H
Sbjct: 33 IFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAH 92
Query: 317 PFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 412
PFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 93 PFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 128 bits (308), Expect = 9e-31
Identities = 78/212 (36%), Positives = 116/212 (54%), Gaps = 7/212 (3%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVP*SQDPVSSIWVRRERPLTTFHCACTWCPTNMNS 218
M RRPARCYRYCKNKPYPKSR+ R VP S+ + + R+ + F C +++
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLG-RKRAGVDEFPL----CIHLVSN 55
Query: 219 *AQRLWRQDVSAAISTS*RTAERISS-------ISA*DFTLSTLSASIKCYHALELIGSR 377
+++ + + AA + + +I + A F + ++ + C A L +
Sbjct: 56 EYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRL---Q 112
Query: 378 LGCVVRLASLRXTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 557
G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWG
Sbjct: 113 TGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWG 172
Query: 558 FTKYERDEFEKLREEGRLANDGCIVQYRPEHG 653
F++Y RDE+ + R G + DGC ++ + G
Sbjct: 173 FSQYARDEYIEKRSRGEIIPDGCYAKFLNKRG 204
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 166 bits (404), Expect = 2e-42
Identities = 74/92 (80%), Positives = 83/92 (90%)
Frame = +2
Query: 137 IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLH 316
IFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R H
Sbjct: 33 IFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAH 92
Query: 317 PFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 412
PFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 93 PFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 127 bits (307), Expect = 1e-30
Identities = 78/212 (36%), Positives = 116/212 (54%), Gaps = 7/212 (3%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVP*SQDPVSSIWVRRERPLTTFHCACTWCPTNMNS 218
M RRPARCYRYCKNKPYPKSR+ R VP S+ + + R+ + F C +++
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLG-RKRAGVDEFPL----CIHLVSN 55
Query: 219 *AQRLWRQDVSAAISTS*RTAERISS-------ISA*DFTLSTLSASIKCYHALELIGSR 377
+++ + + AA + + +I + A F + ++ + C A L +
Sbjct: 56 EYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRL---Q 112
Query: 378 LGCVVRLASLRXTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 557
G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWG
Sbjct: 113 TGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWG 172
Query: 558 FTKYERDEFEKLREEGRLANDGCIVQYRPEHG 653
F++Y RDE+ + R G + DGC ++ + G
Sbjct: 173 FSQYARDEYIEKRSRGEIIPDGCYAKFLNKRG 204
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 614 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 480
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 614 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 480
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 614 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 480
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 614 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 480
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 420 ARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSK 548
AR+ IG+ + + K AL++A F PG+ +I V +
Sbjct: 139 ARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 241 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQ--IEDTGSWD 122
CL L L + H++ ++W+ +N R LL + E+TG D
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETGEDD 981
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 156 RERPLTTFHCACTWCPTNMNS 218
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 454 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 612
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 152 KKRATVDDFPLCVHLVSDEYEQLSSEALEAG 244
+KRA +D LC+ +S + E ++ +LE+G
Sbjct: 64 EKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 143 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 286
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 484 SSRLCAVPSSSSPDVKRSTYQRSGVS 561
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 284 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 388
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 9.5
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 421 HVFALDSPSC--PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRS 591
H+ +LDS S P AL + + VPS SSP VK ++ G S S SLRS
Sbjct: 422 HIPSLDSSSLLTPLALPNKKAFQPVKF-RVPSFSSPLVKPASSSSFGRSHSHLGTSLRS 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,825
Number of Sequences: 5004
Number of extensions: 61026
Number of successful extensions: 200
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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