Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I05
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 164 5e-41
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 160 1e-39
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 157 7e-39
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.80
07_03_1509 - 27246721-27247350 29 2.4
05_04_0070 + 17643945-17644002,17644173-17644775,17645376-176455... 28 5.6
02_05_1161 - 34583072-34583249,34583363-34583715,34583820-345840... 28 7.5
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 9.9
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 27 9.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 164 bits (399), Expect = 5e-41
Identities = 72/99 (72%), Positives = 84/99 (84%)
Frame = +2
Query: 125 PRSXIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIR 304
P+ I+D+G K+ VD+FP CVHLVS E E +SSEALEA RI CNKY+ KN GKD FH+R
Sbjct: 29 PKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLR 88
Query: 305 MRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYCS 421
+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG C+
Sbjct: 89 VRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 127
Score = 135 bits (327), Expect = 3e-32
Identities = 80/207 (38%), Positives = 112/207 (54%), Gaps = 2/207 (0%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVP*SQDPVSSIWVRRERPLTTFHCA--CTWCPTNM 212
MGRRPARCYR KNKPYPKSR+CRGVP + + + ++++ +C +W N+
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 213 NS*AQRLWRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVV 392
+S A R + ++ + + F + ++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGA-- 118
Query: 393 RLASLRXTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYE 572
+ T ARV IGQ ++SVR + EALRRAKFKFPGRQKI S+KWGFTK+
Sbjct: 119 -FGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFT 177
Query: 573 RDEFEKLREEGRLANDGCIVQYRPEHG 653
R+E+ KL+ EGR+ +DG Q HG
Sbjct: 178 REEYVKLKAEGRIMSDGVNAQLLGSHG 204
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 160 bits (388), Expect = 1e-39
Identities = 70/99 (70%), Positives = 83/99 (83%)
Frame = +2
Query: 125 PRSXIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIR 304
P+ IFD+G+K+ + DDFPLCVHLVS E E +SSEALEA RI CNKY+ K+ GKD FH+R
Sbjct: 336 PKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLR 395
Query: 305 MRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYCS 421
+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G C+
Sbjct: 396 VCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCA 434
Score = 125 bits (301), Expect = 4e-29
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 3/204 (1%)
Frame = +3
Query: 51 PARCYRYCKNKPYPKSRFCRGVP*SQDPVSSIWVRRERPLTTFH-CA--CTWCPTNMNS* 221
P RCYR KNKPYPKSR+CRGVP + + + +++R F C +W N++S
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVG-QKKRSADDFPLCVHLVSWEKENVSSE 370
Query: 222 AQRLWRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVVRLA 401
A R + ++ + A + + ++ + C A L G +
Sbjct: 371 ALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPT 430
Query: 402 SLRXTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 581
T ARVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE
Sbjct: 431 G---TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDE 487
Query: 582 FEKLREEGRLANDGCIVQYRPEHG 653
+ KL+ EGR+ DG + HG
Sbjct: 488 YLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 157 bits (381), Expect = 7e-39
Identities = 69/99 (69%), Positives = 83/99 (83%)
Frame = +2
Query: 125 PRSXIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIR 304
P+ I+D+G K+ VD+F CVHLVS E E ++SEALEA RI CNKY+ K+ GKD FH+R
Sbjct: 25 PKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLR 84
Query: 305 MRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYCS 421
+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG C+
Sbjct: 85 VRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Score = 121 bits (291), Expect = 6e-28
Identities = 72/190 (37%), Positives = 99/190 (52%), Gaps = 2/190 (1%)
Frame = +3
Query: 60 CYRYCKNKPYPKSRFCRGVP*SQDPVSSIWVRRERPLTTFHCA--CTWCPTNMNS*AQRL 233
CYR KNKPYPKSR+CRGVP + + + ++++ HC +W N+ S A
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 234 WRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVVRLASLRX 413
R + ++ S + F + ++ + C A L G +
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGA---FGKPQG 120
Query: 414 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 593
T ARV IGQ ++SVR EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L
Sbjct: 121 TCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRL 180
Query: 594 REEGRLANDG 623
+ EGR+ DG
Sbjct: 181 KSEGRIMPDG 190
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 164 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 283
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +1
Query: 433 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 561
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>05_04_0070 +
17643945-17644002,17644173-17644775,17645376-17645579,
17646480-17647009
Length = 464
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 257 NKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGY 415
+KY++ + H + H+IR N+ L+ +G + L T + + G Q Y
Sbjct: 117 DKYVITGFEQGHTHAFVSPDKRHLIRSNRKLTLSGRNTLLTCHKASIGTSQAY 169
>02_05_1161 -
34583072-34583249,34583363-34583715,34583820-34584002,
34584096-34584250,34584346-34584493
Length = 338
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 225 ELSCSYSSDTKCTHSGKSSTVALFLPKSKIXDLGIXVHPDRTSISDTV 82
EL Y + KC GK ++ DLG+ P R S+++ V
Sbjct: 270 ELFPRYPATAKCEDDGKPMAKPYKFSNQRLKDLGLEFTPLRKSLNEAV 317
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 270 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 169
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 530 LTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTCYSXPE 405
L+SGEL +G + D+ LPPV G G S+A S P+
Sbjct: 134 LSSGELLIGASSPYDEPPLPPVHSRRG-AGRSSAVPRLSAPD 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,397,542
Number of Sequences: 37544
Number of extensions: 464540
Number of successful extensions: 1274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -