Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I05
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         62   5e-10
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   0.62 
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           28   7.6  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 28   7.6  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_4256| Best HMM Match : PsiF_repeat (HMM E-Value=4.2)                28   7.6  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    28   7.6  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 30/40 (75%), Positives = 33/40 (82%)
 Frame = +3

Query: 414 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 533
           TVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 11  TVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +2

Query: 233 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 412
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S   ++          G P  
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS--NSEEFAKAFSCPRGSPMN 169

Query: 413 YCSTCSHW 436
               C  W
Sbjct: 170 PEHKCEMW 177


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 542 YVDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CY 417
           Y +  ++G   + T     D+C+P   + HGH    +ANT  CY
Sbjct: 68  YAESCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICY 109


>SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -1

Query: 285 FPQFFTRYLLQQIRPASKASELSCSYSSDTKC-THSGKSSTVALFLPKSKIXDLGIXVHP 109
           F   F +Y  Q +    K  +       D K  T +G+ + VA+  P  K    G  + P
Sbjct: 154 FQDQFDKYTFQTLDQLGKDYDYDSIMHYDRKAFTKNGQPTVVAIGNPNKKFGGTGAALSP 213

Query: 108 DRTSISDTVYFCST 67
                 +T+Y C T
Sbjct: 214 KDVIEINTLYDCQT 227


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 264 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSK 139
           Y+++QI+ ASK   L     + T C  + K S V  F+ K K
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQK 292


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 264  YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSK 139
            Y+++QI+ ASK   L     + T C  + K S V  F+ K K
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQK 1060


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 344 MLSCAGADRLQTGMRGAFGKPQGYCSTCS 430
           M   AG D +  G RG F  P G C +C+
Sbjct: 338 MTGDAGRDGVAEGRRGTFMSPVGACLSCT 366


>SB_4256| Best HMM Match : PsiF_repeat (HMM E-Value=4.2)
          Length = 78

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -2

Query: 206 RRTPSARTVE----SRQRSLSSYPNRRYXILGSXYTPTEPRFRIRFIFAVPVASCWPAPH 39
           RR+P + TV+    +  R+ ++   +    L S  T T    RIR+ F +PVA C+    
Sbjct: 14  RRSPPSSTVQQYKLNTSRARAARQGKAQTFLSSSLTSTLDEKRIRYNFKLPVA-CYDRTT 72

Query: 38  G 36
           G
Sbjct: 73  G 73


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 421 HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMS 582
           HV A   P  P + +    + +S   A+ +SS+P +  S  Q +  + + N  S
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTAS 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,900,659
Number of Sequences: 59808
Number of extensions: 520792
Number of successful extensions: 1507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)