Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I05
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 159 1e-39
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 159 1e-39
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 159 1e-39
At4g17840.1 68417.m02661 expressed protein 29 2.0
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 3.6
At3g23540.1 68416.m02962 expressed protein ; expression supporte... 29 3.6
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 4.7
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 6.2
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 8.2
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 27 8.2
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 27 8.2
At1g07490.1 68414.m00802 expressed protein 27 8.2
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 159 bits (387), Expect = 1e-39
Identities = 71/99 (71%), Positives = 83/99 (83%)
Frame = +2
Query: 125 PRSXIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIR 304
P+ I+D+G KR VD+FP CVHLVS E E +SSEALEA RI CNKY+VK+ GKD FH+R
Sbjct: 29 PKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLR 88
Query: 305 MRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYCS 421
+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK G C+
Sbjct: 89 IRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCA 127
Score = 133 bits (321), Expect = 1e-31
Identities = 82/207 (39%), Positives = 107/207 (51%), Gaps = 2/207 (0%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVP*SQDPVSSIWVRRERPLTTFHCA--CTWCPTNM 212
MGRRPARCYR K KPYPKSR+CRGVP + + + ++R+ C +W N+
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 213 NS*AQRLWRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVV 392
+S A R + + S I F + ++ + C A L + G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRL---QTGMRG 117
Query: 393 RLASLRXTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYE 572
T ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+
Sbjct: 118 AFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177
Query: 573 RDEFEKLREEGRLANDGCIVQYRPEHG 653
R E+ KLR R+ DG ++ HG
Sbjct: 178 RAEYTKLRAMKRIVPDGVNAKFLSNHG 204
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 159 bits (387), Expect = 1e-39
Identities = 71/99 (71%), Positives = 83/99 (83%)
Frame = +2
Query: 125 PRSXIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIR 304
P+ I+D+G KR VD+FP CVHLVS E E +SSEALEA RI CNKY+VK+ GKD FH+R
Sbjct: 29 PKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLR 88
Query: 305 MRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYCS 421
+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK G C+
Sbjct: 89 IRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCA 127
Score = 134 bits (323), Expect = 6e-32
Identities = 83/207 (40%), Positives = 109/207 (52%), Gaps = 2/207 (0%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVP*SQDPVSSIWVRRERPLTTFHCA--CTWCPTNM 212
MGRRPARCYR K KPYPKSR+CRGVP + + + ++R+ C +W N+
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 213 NS*AQRLWRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVV 392
+S A R + + S I F + ++ + C A L + G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRL---QTGMRG 117
Query: 393 RLASLRXTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYE 572
T ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+
Sbjct: 118 AFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177
Query: 573 RDEFEKLREEGRLANDGCIVQYRPEHG 653
R +F KLR+E R+ DG ++ HG
Sbjct: 178 RADFTKLRQEKRVVPDGVNAKFLSCHG 204
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 159 bits (386), Expect = 1e-39
Identities = 71/99 (71%), Positives = 83/99 (83%)
Frame = +2
Query: 125 PRSXIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIR 304
P+ I+D+G KR VD+FP CVHLVS E E +SSEALEA RI CNKY+VK+ GKD FH+R
Sbjct: 29 PKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLR 88
Query: 305 MRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYCS 421
+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK G C+
Sbjct: 89 IRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCA 127
Score = 134 bits (324), Expect = 5e-32
Identities = 82/207 (39%), Positives = 110/207 (53%), Gaps = 2/207 (0%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVP*SQDPVSSIWVRRERPLTTFHCA--CTWCPTNM 212
MGRRPARCYR K KPYPKSR+CRGVP + + + ++R+ +C +W N+
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 213 NS*AQRLWRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVV 392
+S A R + + S I F + ++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 393 RLASLRXTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYE 572
+ T ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+
Sbjct: 121 KALG---TCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177
Query: 573 RDEFEKLREEGRLANDGCIVQYRPEHG 653
R ++ KLR+E R+ DG ++ HG
Sbjct: 178 RADYTKLRQEKRIVPDGVNAKFLSCHG 204
>At4g17840.1 68417.m02661 expressed protein
Length = 422
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +1
Query: 439 SPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 612
S S C+ +GG SS+L P+ S D+K+ + +R+ +++ LRS +K ++S
Sbjct: 19 SSSSWCSSGSGGFRSSSKLFDSPACSRSDLKKRSGKRNSRLNGLSLEKLRS-IKASSS 75
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 224 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 355
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
>At3g23540.1 68416.m02962 expressed protein ; expression supported
by MPSS
Length = 568
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 473 PPVTRAHGHDGLSNANTCYSXPEACQTHHASQS 375
PP TR HG NA C S E + A+QS
Sbjct: 446 PPETRIHGGSAFLNAVQCISSREESTSTRANQS 478
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 200 SDEYEQLSSEALEAGRICCNKYLV 271
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 248 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 337
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 152 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 325
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 430 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 558
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 430 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 558
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 484 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 585
SS C+VPSSSS + RS+ ++ S + SL
Sbjct: 48 SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,046
Number of Sequences: 28952
Number of extensions: 343384
Number of successful extensions: 971
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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