Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I01
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 54 2e-08
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 46 4e-06
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 46 4e-06
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 41 2e-04
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.58
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 29 0.77
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 28 1.3
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 5.4
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 7.2
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 25 7.2
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 9.5
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/37 (64%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +3
Query: 129 VEKVL-DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 236
VE +L DR KNG+ EYY+KW GY DNTWEPE NL
Sbjct: 24 VEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = +3
Query: 105 QKPKRNFLVEKVLDRRI--KNGVLEYYLKWKGYSD-EDNTWEPE-DNLDCPDLIQ 257
++ + ++VEKVL R+ K G EY LKW+GY D DNTW E D C LI+
Sbjct: 75 EEEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIE 129
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 510 PAKQANVRCPQVVIQFYEERLTW 578
P+ N +CPQ ++QFYE LT+
Sbjct: 302 PSTITNKKCPQKMLQFYESHLTF 324
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Frame = +3
Query: 123 FLVEKVLDRRIKN--GVLEYYLKWKGYSD-EDNTW-EPEDNLDCPDLI 254
F VE +LD R+K +YYLKW+GY D DNTW + ED C +LI
Sbjct: 176 FAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELI 223
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Frame = +3
Query: 111 PKRN-FLVEKVLDRRI-KNGVLEYY-LKWKGYSDEDNTWEPEDNL 236
PK+ + VE+++D ++ +NG ++ Y ++W YS +TWEP +NL
Sbjct: 3 PKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.58
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = +3
Query: 96 KTNQKPKRNFLVEKVLDRRIKNGV--------LEYYLKWKGYSDEDNTWEPEDNL 236
+ +++P+ ++ VLD R+ G E+ +KW +S TWEP +N+
Sbjct: 182 EVSEEPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNI 236
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 87 RKKKTNQKPKRNFLVEKVLDRRIKN-GVLEYYLKWKGYSDEDNTWE 221
RK++ ++ K+ V++++ + + + G +EY +KWK + TWE
Sbjct: 279 RKRENYEEYKQ---VDRIVAKHLNSDGSVEYLVKWKQLLYDFCTWE 321
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 28.7 bits (61), Expect = 0.77
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Frame = +3
Query: 105 QKPKRNFLVE--KVLDRRI-----KNGVLEYYLKWKGYSDEDNTWEPED 230
++ ++N L E K+++R + + G EY++KW+ ++ TWE D
Sbjct: 292 ERERKNMLFEEYKIVERIVASETNEEGKTEYFVKWRQLPYDNCTWEDAD 340
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 489 TDEADLVPAKQANVRCPQVVIQFYEE 566
T+++ L PAKQ N + P+ + Q Y+E
Sbjct: 75 TEDSSLSPAKQENEKSPEGIEQKYQE 100
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 231 YPLVPMYYLHHCILSISSNI 172
YPL P++ L +C+L I S++
Sbjct: 513 YPLAPIFSLVNCVLYIRSSV 532
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 511 GTRSASSVPCHFMRNMSSPLLSVAPIIFSGSNPRSKP 401
G S +P M N+SSPL++ +P SG NP +P
Sbjct: 401 GPNSIYKIPSASMVNLSSPLVT-SP---SGLNPTGRP 433
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 319 IQRSVNQPQPHLISKVQRKPKVMTRKHL 402
I R++ P+P +I +Q+ P + KH+
Sbjct: 220 IFRALGTPEPEVIKSMQQLPNYVEMKHI 247
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 313 IRIQRSVNQ-PQPHLISKVQRKPKV 384
I+ +RS+++ PQ ++ KV +KPKV
Sbjct: 111 IKQKRSLSESPQESMLEKVSKKPKV 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,111
Number of Sequences: 5004
Number of extensions: 41189
Number of successful extensions: 116
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -