Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_I01
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)        123   1e-28
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 59   3e-09
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                54   8e-08
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)                45   5e-05
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.022
SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)                36   0.038
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)                35   0.066
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.066
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   35   0.066
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   33   0.20 
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)                   30   1.9  
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)                     29   4.3  
SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_46270| Best HMM Match : rve (HMM E-Value=1.2e-09)                   28   7.6  
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
          Length = 226

 Score =  123 bits (297), Expect = 1e-28
 Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
 Frame = +3

Query: 114 KRNFLVEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQXXXXXXXXXXXX 293
           +  + VEKV+D+R+ NG +EY LKWKGY D +NTWE E+ L CP+LI+            
Sbjct: 25  EEEYEVEKVMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEYEKKKKASSKR 84

Query: 294 XXXXXXXXXXXXXXXXXXXPDLXXXXXXXXXXXXXXXFD---RGLEPEKIIGATDSSGEL 464
                               +                 D    G E + I+GAT+  G++
Sbjct: 85  KDSTSEKGESKPKKRKVNAYEELGMKAVEVEDASKDDVDPIAEGWEADTILGATEVDGQI 144

Query: 465 MFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERLTW 578
            FL++W+ TD ADL+P+K AN++ PQ+VI+FYEER+TW
Sbjct: 145 HFLIQWKSTDRADLIPSKVANLKWPQIVIKFYEERVTW 182


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
 Frame = +3

Query: 129  VEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLI 254
            VEK+LDRR++ G +EY ++WKGY   D+TWEP  NL  C +LI
Sbjct: 907  VEKILDRRVQRGKVEYLVRWKGYGPADDTWEPSKNLKGCKELI 949


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 20/45 (44%), Positives = 32/45 (71%)
 Frame = +3

Query: 123 FLVEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQ 257
           +  E +L  R+++G + Y++KWKGYS   NTWEPE+N+  P L++
Sbjct: 25  YAAETILKERVRDGKVWYFIKWKGYSQRYNTWEPEENVLDPRLLK 69


>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
          Length = 517

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 15/35 (42%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
 Frame = +3

Query: 156 KNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQ 257
           ++GV  + ++WKGY+ +D+TWEPE+N+ +C D+++
Sbjct: 13  QDGVRYFKVRWKGYTPDDDTWEPEENVFECEDVLE 47


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +3

Query: 129 VEKVLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNL 236
           + +++ RRI ++G  EY + WK Y   ++TWEP +NL
Sbjct: 24  INEIIGRRITQSGKEEYLVHWKKYKVWESTWEPLENL 60


>SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)
          Length = 132

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 48  LNNCLSLIR*WPTRKKKTNQKPKRNFLVEKVLDRRI--KNGVLEYYLKWKGYSDEDNTWE 221
           LNN  S    +  ++K+  +   + + VE+++ +RI  +NG  EY +KWK +    +T E
Sbjct: 16  LNNVSSADFNFDFQRKRKYKSGSKVYDVERIISQRITSRNGDKEYLVKWKNWPIWTSTLE 75

Query: 222 PEDNL 236
           P ++L
Sbjct: 76  PANHL 80


>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
          Length = 590

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 123 FLVEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 236
           F+V+K+L+ R ++   EY + W   SD+  TWEP  N+
Sbjct: 401 FIVKKLLNCRRRSKTTEYLVLW---SDDSQTWEPRHNI 435


>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 123  FLVEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 236
            F+V+K+L+ R ++   EY + W   SD+  TWEP  N+
Sbjct: 970  FIVKKLLNCRRRSKTTEYLVLW---SDDSQTWEPRHNI 1004


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 123  FLVEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEP 224
            F +++VL    + G  EY++ WKG+ D+ N+W P
Sbjct: 1227 FKIDRVLKTWKRGGRGEYWVHWKGWPDKYNSWVP 1260


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 93   KKTNQKPKRNFLVEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEP 224
            +K +    ++F ++ V+  R + G   Y++ WKG+ D+  +W P
Sbjct: 1066 QKVHVTETQHFKIDSVVKTRKRGGRKVYWVHWKGWPDKYKSWVP 1109


>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
          Length = 1097

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 123 FLVEKVLDRRIKNGVLEYYLKWKGYSDE 206
           F +++VL  R + G  EY++ WKG+ D+
Sbjct: 627 FKIDRVLKTRKRGGRDEYWVHWKGWPDK 654


>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
          Length = 1557

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 123 FLVEKVLDRRIKNGVLEYYLKWKGYSDED 209
           F +E+V+  R K    EY+++W+G+ D +
Sbjct: 359 FRIERVIRTRGKGRYEEYFVQWRGWPDNN 387


>SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 162 GVLEYYLKWKGYSDEDNTWEP 224
           G  +Y++ WKG+ ++ N+W P
Sbjct: 100 GARKYWVHWKGWPNKYNSWVP 120


>SB_46270| Best HMM Match : rve (HMM E-Value=1.2e-09)
          Length = 657

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 123 FLVEKVLDRRIKNGVLEYYLKWKGYSDED 209
           F +E+V+  R K    EY+++W+G+ D +
Sbjct: 384 FRIERVIRTRGKGRNEEYFVQWRGWPDNN 412


>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 123 FLVEKVLDRRIKNGVLEYYLKWKGYSDED 209
           F +E+V+  R K    EY+++W+G+ D +
Sbjct: 385 FRIERVIRTRGKGRNEEYFVQWRGWPDNN 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,021,469
Number of Sequences: 59808
Number of extensions: 285948
Number of successful extensions: 788
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)