Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_I01
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 44 7e-05
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic... 36 0.023
At2g47450.1 68415.m05922 chloroplast signal recognition particle... 36 0.031
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 33 0.22
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 31 0.88
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c... 31 0.88
At1g68470.1 68414.m07822 exostosin family protein contains Pfam ... 30 1.5
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794... 29 2.7
At4g01870.1 68417.m00245 tolB protein-related contains weak simi... 28 4.7
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ... 28 6.2
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 8.2
At4g36720.1 68417.m05210 abscisic acid-responsive HVA22 family p... 27 8.2
At3g48910.1 68416.m05343 expressed protein 27 8.2
At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.2
>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
identical to like heterochromatin protein LHP1
[Arabidopsis thaliana] GI:15625407; contains Pfam
profile PF00385: 'chromo' (CHRromatin Organization
MOdifier)
Length = 445
Score = 44.4 bits (100), Expect = 7e-05
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 129 VEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 236
+E + +R++ G ++Y +KW+G+ + NTWEP +NL
Sbjct: 110 IEAIRRKRVRKGKVQYLIKWRGWPETANTWEPLENL 145
>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
to chromomethylase CMT2 [Arabidopsis thaliana]
GI:14583094
Length = 1295
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 144 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQ 257
D+ KNG L++ + WKGY +++TWE + L +C D I+
Sbjct: 851 DKTGKNG-LKFKVHWKGYRSDEDTWELAEELSNCQDAIR 888
>At2g47450.1 68415.m05922 chloroplast signal recognition particle
component (CAO) nearly identical to CAO [Arabidopsis
thaliana] GI:4102582
Length = 373
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 126 LVEKVLDRRIKNG--VLEYYLKWKGYSDEDNTWEPEDNLD 239
+ E V+ +R+ + +EY +KW SD TWEP+DN+D
Sbjct: 321 VAESVIGKRVGDDGKTIEYLVKWTDMSDA--TWEPQDNVD 358
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Frame = +3
Query: 114 KRNFLVEKVL-DRRIKNG----VLEYYLKWKGYSDEDNTWEPE 227
K+N VE+++ DR K+G V EY +KW+G S + TWE +
Sbjct: 530 KQNSQVERIIADRISKDGLGDVVPEYLVKWQGLSYAEATWEKD 572
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 96 KTNQKPKRNFLVEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 236
+TN K LV ++ D +E+ +KWKG S W+ +L
Sbjct: 438 QTNNKSTVPVLVSQLFDTEPDWNEMEFLIKWKGQSHLHCQWKTLSDL 484
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 129 VEKVLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 236
V+++L R ++G LEY +K+K S ++ WE E ++
Sbjct: 192 VDRILACREEDGELEYLVKYKELSYDECYWESESDI 227
>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
thaliana]
Length = 791
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 168 LEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQ 257
L+ ++WKGY+ +TWEP L +C + ++
Sbjct: 360 LQLMVRWKGYNSSYDTWEPYSGLGNCKEKLK 390
>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 455
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -3
Query: 233 IILWFPCIIFITVSFPFQVIFQNTILNAPVQNF--FNKKIPLRLLVRFLFSCRPLS 72
++L C +F+T++FPF + F +I NF + +P + L +CR L+
Sbjct: 39 LLLCSICFLFLTLNFPFTIEFTASIPRTCDHNFTVYVYDLPKEFNIGLLQNCRHLN 94
>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
Domain of Unknown function
Length = 350
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 481 GKEQMKQILYQQNKLMCGAHK*LFNFMKKGSHGTHQXSMKEI 606
GKE+ K+++ Q ++M G H F+F+ +G T Q +M+ I
Sbjct: 289 GKEKQKKLMNQSLEVMSGTHSNSFDFLLEGL--TPQEAMQYI 328
>At4g01870.1 68417.m00245 tolB protein-related contains weak
similarity to TolB protein precursor (Swiss-Prot:P44677)
[Haemophilus influenzae]
Length = 652
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 180 LKWKGYSDEDNTWEPEDNLDCPDL 251
L W GY D TW D LD L
Sbjct: 605 LTWNGYEDGTPTWHTADELDLSQL 628
>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
similarity to Golgi-specific DHHC zinc figer protein
[Mus musculus] GI:21728103; contains Pfam profile
PF01529: DHHC zinc finger domain
Length = 477
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 449 IRSANYFFWF*STIKTRCFLVITFGFLCTFE 357
+R+ +FF F ST T C V F +L F+
Sbjct: 185 VRNYRFFFMFISTSTTLCIYVFAFSWLNIFQ 215
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 132 EKVLDRRI-KNGVLEYYLKWKGYSDEDNTWE 221
++++ R+ K G E Y+KW G + ++ TWE
Sbjct: 590 QRIVALRVSKEGNQEAYVKWTGLAYDECTWE 620
>At4g36720.1 68417.m05210 abscisic acid-responsive HVA22 family
protein low similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 227
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 257 LYKIWTIKIILWFPCIIFITVSFPFQVIFQNTILNAPVQNFFNKKIPLRL 108
L +++T KII WFP ++ V F F V Q + Q + N+ P L
Sbjct: 80 LVEVFTDKIISWFP--LYYHVKFAFLVWLQLPTVEGSKQIYNNQIRPFLL 127
>At3g48910.1 68416.m05343 expressed protein
Length = 224
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 429 KIIGATDSSGELMFLMKWQGTD--EADLVPAKQANVRCPQVVIQFYEE 566
+II G F + W + E+ +VPA CP+ +I+F E+
Sbjct: 9 EIIKTRKVQGRECFEVSWNDLEGLESSIVPADLVERACPEKIIEFKEK 56
>At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 491
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -3
Query: 575 CEPFFIKLNNYLWAPHISLFCWYKICFICSLPFHEEHEFTTTIRSANYFF 426
C P+ ++ L P I +C+ H+ HEF TI S +F
Sbjct: 128 CLPYTNRIAKNLGIPKIIFHGMCCFNLLCTHIMHQNHEFLETIESDKEYF 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,972,454
Number of Sequences: 28952
Number of extensions: 208418
Number of successful extensions: 498
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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