Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H24
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 73 2e-14
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 45 5e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 3e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 4e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 1e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 1e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 1e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 4e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 37 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 37 0.001
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.001
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.005
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.009
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.012
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.012
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.022
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 32 0.029
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.038
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 31 0.050
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.20
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 0.20
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.27
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 29 0.27
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 0.46
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 1.4
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 1.9
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 26 2.5
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 26 2.5
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 4.3
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 4.3
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 5.7
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 25 5.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 24 7.6
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 24 10.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 10.0
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 72.9 bits (171), Expect = 2e-14
Identities = 34/75 (45%), Positives = 52/75 (69%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
++NLS+ E ++ DL + FG + ++YLAK+K TG KGFA+V + R A KA L+G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
Query: 232 HGYDHLILNVEWSKP 276
+G+++LIL E+SKP
Sbjct: 266 YGWNNLILRCEFSKP 280
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 44.8 bits (101), Expect = 5e-06
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 73 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH-L 249
A E ++DL FGPV L+L ++ TG+ KG+A + + A KA+ N D L
Sbjct: 21 ATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKL 80
Query: 250 ILNVEWSKPPQ 282
++ + +PP+
Sbjct: 81 EVDFAFLEPPE 91
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL+ E D+ L FG + ++++ +K T + KGFAY+ F DA +A L+
Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDA 386
Query: 232 HGYDHLILNV 261
+ +L+V
Sbjct: 387 KPFQGRLLHV 396
Score = 27.9 bits (59), Expect = 0.61
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 166 GFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 270
GF +V FK +A A A+ ++NG D L ++ S
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 26.6 bits (56), Expect = 1.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 133 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+AK K G + FA++ FK DA KAI+ LN
Sbjct: 37 VAKTKE-GVSRRFAFIGFKNEEDADKAIRYLN 67
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.9 bits (94), Expect = 4e-05
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS A E D+ G G + + L + +G KGF YV F D+AK +NG
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS-DIDSAKKCVEMNG 428
Query: 232 H 234
H
Sbjct: 429 H 429
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 39.9 bits (89), Expect = 1e-04
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
ISNL E + +L+K FG + L K + G KGF + FK +DA AI L+G
Sbjct: 314 ISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDG 373
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.9 bits (89), Expect = 1e-04
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL + ++ DL G V + +A E TG KGF V F+ DAA +I+ LNG
Sbjct: 284 VGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKLNG 342
Query: 232 HGY 240
+ Y
Sbjct: 343 YRY 345
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 39.9 bits (89), Expect = 1e-04
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +1
Query: 43 PSCISNLSNFA---VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 213
PSC+ + N E + D+ K GPV L + +G KG+ + + A AA A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 214 IQSLNGHGYDHLILNVEWSKPPQ 282
+++LN + L V++ Q
Sbjct: 63 VRNLNNYDAGTRRLRVDFPTADQ 85
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 38.3 bits (85), Expect = 4e-04
Identities = 19/74 (25%), Positives = 38/74 (51%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+S +++ E ++ + FG V + + +E T +GF ++ F +A AI +LN
Sbjct: 105 VSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNS 164
Query: 232 HGYDHLILNVEWSK 273
+ +LNV+ +K
Sbjct: 165 QEFYGRVLNVQKAK 178
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.1 bits (82), Expect = 0.001
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+S L+N ++ D + GPV + ++K +G KG AYV F D+ +A +L+G
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIALSG 302
Score = 37.1 bits (82), Expect = 0.001
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 49 CISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
C+SN+ + D+ + + FG + ++L ++ KGF Y+ ++ A A++ +N
Sbjct: 343 CVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMN 401
Query: 229 G 231
G
Sbjct: 402 G 402
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.1 bits (82), Expect = 0.001
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLA---KEKSTGHCKG--FAYVHFKFRADAAKAI 216
+ NL + +D+ +L + FG K ++ K KST FA++ F+ + A AI
Sbjct: 24 VGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNAI 83
Query: 217 QSLNGHGYDHLILNVEWS 270
SLNG + L VE++
Sbjct: 84 ASLNGSSFQGNTLKVEYT 101
Score = 35.1 bits (77), Expect = 0.004
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 88 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+++L FG + LA ST KG+ +V F +A +AI +LNG
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+ L EA + +L GPV + + ++ T G+AYV+F D KA+ LN
Sbjct: 84 VGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELN 142
Score = 35.1 bits (77), Expect = 0.004
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I NL E + DL FG + L L K+++ +GF +V++ A KA+ LN
Sbjct: 265 IKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP-RGFGFVNYANHECAQKAVDELND 323
Query: 232 HGY 240
Y
Sbjct: 324 KEY 326
Score = 31.5 bits (68), Expect = 0.050
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I NL + D FG + +A ++ G+ KG+ +VHF A AI+ +NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
I NL + + + FG + + ++ G KGF +V + +A KA+ +N
Sbjct: 368 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMN 425
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 36.3 bits (80), Expect = 0.002
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+S LS E+DI+ +GP+ ++ + + K TG G+A+V F+ D A ++ G
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAG 163
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.7 bits (76), Expect = 0.005
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 270
FG V ++ + K G GFA+V K R A +A+ SLNG D + V+W+
Sbjct: 131 FGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.9 bits (74), Expect = 0.009
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I NLS ++ DL +GPV ++ L +T +G A+V ++ DA +A + L+G
Sbjct: 16 IKNLSFKITAEEMYDLFGRYGPVRQIRLG---NTVQTRGTAFVVYENVQDARRACEKLSG 72
Query: 232 HGYDHLILNVEWSKP 276
+ + L V + P
Sbjct: 73 YNFMDRYLVVHYYNP 87
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.5 bits (73), Expect = 0.012
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL +AD+ + G + ++ L + TG CKGF +V F KA++ G
Sbjct: 232 VGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMEL--G 289
Query: 232 HGYDHLILNVEWSKPPQN 285
H L + SK +N
Sbjct: 290 HNSWRLEYGEDRSKRMRN 307
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.5 bits (73), Expect = 0.012
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL N E +I + ++ FGP+ ++ + E++ A+VHF A A KA+Q L
Sbjct: 210 LGNLPNGITEDEIREDLEPFGPIDQIKIVTERN------IAFVHFLNIAAAIKAVQELP- 262
Query: 232 HGYDHLILNVEWSK 273
LN +WSK
Sbjct: 263 -------LNPKWSK 269
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.022
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 52 ISNLSNFAV--EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 225
+ NL + + ++ ++DL FG + LA ++G KG+ +V F+ A +A +L
Sbjct: 386 VKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTL 445
Query: 226 NG 231
NG
Sbjct: 446 NG 447
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 32.3 bits (70), Expect = 0.029
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ N+ E + ++ GPV L + TG KG+ + F A A++ LN
Sbjct: 11 VGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNN 70
Query: 232 HGYDHLILNVEW-SKPPQNN 288
+ VE+ S P+ N
Sbjct: 71 SELGPRKIRVEFPSNDPRRN 90
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.9 bits (69), Expect = 0.038
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK----GFAYVHFKFRADAAKAIQ 219
+ LS +++I L + G V K+ + + + G A+V F + D KAI+
Sbjct: 48 VGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIE 107
Query: 220 SLNGHGYDHLILNVEWSKPPQ 282
+LNG D + V+ ++P Q
Sbjct: 108 TLNGKTLDDREIVVQKARPVQ 128
Score = 27.5 bits (58), Expect = 0.81
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 118 VHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE 264
+ ++ L E+ G +GF +V F D ++AI+ +NG L L V+
Sbjct: 245 IRRIKLRGEQRRG--RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.5 bits (68), Expect = 0.050
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 186
+ N+ ++ G V+++ + +K TGH KGFAY+ F
Sbjct: 59 VGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.20
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 61 LSNFAVEADIDDLVKGFGP---VHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 216
+ N A EA+ + L + FG + + + ++ T KGFAY+ FK KA+
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.5 bits (63), Expect = 0.20
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 70 FAVEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH 246
F++E D + D K G G +G A+ +F +A +Q+LNG+ +
Sbjct: 211 FSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTLNGYEING 270
Query: 247 LILNVEWSK 273
L VEW +
Sbjct: 271 RRLRVEWKR 279
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.27
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS + E I L G + ++ + ++ T GF +V + DA +++ ++
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISR 95
Query: 232 HGYDHLILNVE 264
D I+ +
Sbjct: 96 TSLDERIIRAD 106
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 29.1 bits (62), Expect = 0.27
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 154 GHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK--PPQNN*KV 297
G +G A+ +F +A +Q LNG+ L VEW + PP +V
Sbjct: 270 GVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERV 319
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 0.46
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+ NL ++ + +L GPV +++ +++ GF + F D A Q LN
Sbjct: 15 LGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILN 73
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 258
+A + + FG + + + K+ S ++ + F+ + A AI + I +
Sbjct: 181 DAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEK----PSKIYD 236
Query: 259 VEWSKPPQNN*KVP 300
V+W KPP++N P
Sbjct: 237 VQWLKPPKSNSNTP 250
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 1.9
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 189
I L+ + + D + FG V + ++ +TG +GF ++ FK
Sbjct: 167 IGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 2.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 210 FRSICPELEVHISKSFAMSSTFFLRKVQFMHRAKTF 103
+ S CPEL+ K A++++F R + + +++ F
Sbjct: 335 YLSYCPELKKSKHKGIALANSFSFRIAKVLKKSRIF 370
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 2.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 90 NISFNCKIAKV*YTGWQLRLHDAXG 16
N+S CK + GW+ RL DA G
Sbjct: 256 NVSVACKKKNEAFFGWKFRLCDAIG 280
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 196 ADAAKAIQSLNG--HGYDHLILNVEWSK 273
A A + +Q G HG +H +L V WS+
Sbjct: 252 ASAQRQLQIFEGAIHGQEHNLLGVAWSR 279
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 4.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 318 FKFVYKWNFLIVLWRLRPFHVQNQMIITMTIK*LNCFRSICPEL 187
+ F+Y N L + + L V+ + +TI L+ R ICP++
Sbjct: 69 YTFLYLRNSLTITFPLLNSSVKQSLKKELTIGDLSQLREICPQI 112
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 5.7
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 222
+SN+S + K FG V L L TG G + F R+ + A S
Sbjct: 98 VSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 106 GFGPVHKLYLAKEKSTGHCKGFAYVH 183
G G ++YLAKEK TG +H
Sbjct: 96 GKGKFGRVYLAKEKKTGFIVALKTLH 121
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 119 CINCTLRRKKVLDIAKDLLMCTSSSGQMLRKQFN 220
CI +K +D+A+D+ T S G+ L+ + N
Sbjct: 1279 CIQKIEELEKQIDVARDVAEDTKSLGKELQNKIN 1312
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 140 FARYSLCTGPKPLTRSSISASTAKLLRFDIQD 45
FAR +C PL S++ KLL I D
Sbjct: 507 FARDPICRKTNPLAVESVAEVLEKLLTLGIAD 538
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.8 bits (49), Expect = 10.0
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Frame = +1
Query: 46 SCISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH--CKGF-----AYVHFKFRADA 204
SC+ LS+ D DL G +L E +T H C + Y H + +
Sbjct: 2523 SCLDALSDIYYSLDEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYEHAQLKVCT 2582
Query: 205 AKAIQSLNGHGY--DHLIL 255
S HG+ DH IL
Sbjct: 2583 GSLPYSPTEHGFWLDHWIL 2601
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,924
Number of Sequences: 5004
Number of extensions: 24457
Number of successful extensions: 106
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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