Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H24
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 91 4e-19
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 9e-06
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 6e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 7e-04
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 7e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.004
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.005
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 37 0.007
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.049
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 34 0.049
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.049
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.086
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.11
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 32 0.20
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.20
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 31 0.26
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 31 0.35
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 31 0.35
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 30 0.60
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.60
SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016) 30 0.80
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 29 1.1
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 28 3.2
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 27 7.4
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 90.6 bits (215), Expect = 4e-19
Identities = 38/74 (51%), Positives = 56/74 (75%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
++NLS E+D+ +L + GP+ +++LAK+K T KGFA+++F R DAA+AI+ L+G
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
Query: 232 HGYDHLILNVEWSK 273
GYDHLILNVEW+K
Sbjct: 245 FGYDHLILNVEWAK 258
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 46.4 bits (105), Expect = 9e-06
Identities = 21/73 (28%), Positives = 42/73 (57%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
++N+ A E DI +L +G + L++ ++ TG KG+A V ++ +A A+++LNG
Sbjct: 297 VTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNG 356
Query: 232 HGYDHLILNVEWS 270
++V+W+
Sbjct: 357 AEMLGQNISVDWA 369
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 40.3 bits (90), Expect = 6e-04
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I L N+ E + +L+ FG + L K+ +TG KG+A+ + AIQ LNG
Sbjct: 677 IGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNG 736
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 39.9 bits (89), Expect = 7e-04
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ N+ A E + ++ GPV L ++ TG KG+ + +K + A A+++LNG
Sbjct: 29 VGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 88
Query: 232 HGYDHLILNVEWSKPPQN 285
+ + L V+ + +N
Sbjct: 89 YELNGRALRVDSAASEKN 106
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 39.9 bits (89), Expect = 7e-04
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 258
+ DI + G V L ++++TG G+A+V++ DA KA++ +NG + L
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLK 99
Query: 259 VEWSKP 276
V +++P
Sbjct: 100 VSFARP 105
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 133 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN*K 294
+ + K +G GF +V + DA KAI LNG + +L V +S+P +N K
Sbjct: 78 IVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRPGGDNTK 131
Score = 36.7 bits (81), Expect = 0.007
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 43 PSCISNLSNFAVEADIDDLVKGFGP---VHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 213
P C + N +A+ + + FG V+K+ + + CKGF +V + +A A
Sbjct: 273 PGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNA 332
Query: 214 IQSLNGHGY 240
IQ+LNG Y
Sbjct: 333 IQTLNGFMY 341
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/76 (28%), Positives = 41/76 (53%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+SNL A E++I++L G V ++ L ++ G KG+ YV ++ + A+ A+ +L+
Sbjct: 175 VSNLPFDAKESEIEELFSKHGVVKQVRLVTNRA-GKPKGYGYVEYEQESSASTAVLTLDK 233
Query: 232 HGYDHLILNVEWSKPP 279
++V S PP
Sbjct: 234 TEVKGRTISVALSNPP 249
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 76 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+E DI + + FG V L+KE TG KG+ ++ ++ + A AI S+N
Sbjct: 211 LEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
FGP++K+ L+ + KGFA+V + A A++ +NG
Sbjct: 125 FGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNG 165
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST-GHCKGFAYVHFKFRADAAKA---IQ 219
+ NL +A+ + GP+ + ++ K+K C+GF YV F DA KA I+
Sbjct: 24 VRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKAKDNIK 83
Query: 220 SLNG 231
S+ G
Sbjct: 84 SIKG 87
Score = 33.5 bits (73), Expect = 0.065
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEK--STGHCKGFAYVHFKFRADAAKAIQSL 225
I NL+ EA + + FG V + + ++K GF +V F DAAKA++ +
Sbjct: 251 IRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEM 310
Query: 226 NGHGYDHLILNVEWSKP 276
N + V+W+ P
Sbjct: 311 NAKKILGRPVAVDWAVP 327
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 28 VKT*LPSCISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 189
VK L I NLS + + +I +L K FG + + + T H KG A+V ++
Sbjct: 412 VKEGLTVFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYR 465
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 36.7 bits (81), Expect = 0.007
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL E D+ D+ +G + + L + G FA+V F+ DA A++ +G
Sbjct: 265 VGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAG--PPFAFVEFEDPRDAEDAVKGRDG 322
Query: 232 HGYDHLILNVEWSK 273
H +D + VE+ +
Sbjct: 323 HEFDGYRIRVEFPR 336
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.9 bits (74), Expect = 0.049
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 276
FG + + + + +T +GF +V F+F D A AI ++N + V +KP
Sbjct: 28 FGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 33.9 bits (74), Expect = 0.049
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I NLS E +++ G V + + ++ TG +GF +V F + + KAI +G
Sbjct: 9 IGNLSYSVDEQALEEKFHGCDVVD-VKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDG 67
Query: 232 HGYDHLILNVEWSKP 276
+D + V ++P
Sbjct: 68 QDFDGRPMKVNQAQP 82
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.9 bits (74), Expect = 0.049
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
EA + + + FG V + L + T KG+ +V F+ A +A++ +NG
Sbjct: 255 EAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNG 305
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.1 bits (72), Expect = 0.086
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 163 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN 288
K +A+VHF R A KAI+ +G D L + +KP N
Sbjct: 362 KDYAFVHFTERDHALKAIEETDGKEMDGLKIEASLAKPQPGN 403
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKL-YLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
I NL E + D FG + + + ++ TG+ KGFA+++F + AI+++N
Sbjct: 104 IGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMN 163
Query: 229 G 231
G
Sbjct: 164 G 164
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 31.9 bits (69), Expect = 0.20
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I +L +AD+ + FG V + +K T K F +V + A AIQ +NG
Sbjct: 281 IYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNG 340
Query: 232 HGYDHLILNVEWSKPPQNN 288
L V+ +P N
Sbjct: 341 FQIGAKRLKVQLKRPKDAN 359
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
I + +E ++ L++ G + + L + +TG KGFA+ F + A +AI +LN
Sbjct: 157 IGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAITTLN 215
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 31.5 bits (68), Expect = 0.26
Identities = 16/77 (20%), Positives = 39/77 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+++L+ + + ++ +G V + L +++ +GFAYV + + KA++ ++G
Sbjct: 1161 VAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDG 1220
Query: 232 HGYDHLILNVEWSKPPQ 282
D + V+ PP+
Sbjct: 1221 GQIDGQEIAVQSVLPPR 1237
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 276
++ TG +GF +V F + + KAI +G D + V +KP
Sbjct: 130 DRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKP 174
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 31.1 bits (67), Expect = 0.35
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 91 DDLVK---GFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 237
DDLV+ +G + +K T CKG+ +V F+ A KA+ +L G
Sbjct: 114 DDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAALVNKG 165
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 30.7 bits (66), Expect = 0.46
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 133 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 240
L + +TG KGFAYV + A A + LNG Y
Sbjct: 233 LKRNYNTGESKGFAYVTYNSVGSAIYAKEKLNGFEY 268
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 222
+ D+ + FG + + + ++ T KG+ YV F + AA A+++
Sbjct: 66 DEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALEN 113
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 88 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 234
+ D+ FG + +++ KE++ F Y F + A AIQ L+GH
Sbjct: 354 LKDVFSRFGNLIDVWMMKERN------FGYAKFAAKQSADAAIQGLHGH 396
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 30.3 bits (65), Expect = 0.60
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 61 LSNFAVEADIDDLVKGFGPVHKLYLAK--EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ N D + L + F P + AK + G+ KGF +V F +A KA+ +NG
Sbjct: 216 IKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNG 274
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 154 GHCKGFAYVHFKFRADAAKAIQSLNG 231
G KGF +V F+ +A +A+ LNG
Sbjct: 146 GKSKGFGFVSFETPEEAEEAVNVLNG 171
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 30.3 bits (65), Expect = 0.60
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 258
EAD+ L G + + + ++ TG +GF +V F + KAI +G D +
Sbjct: 22 EADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMK 81
Query: 259 VEWSKP 276
V ++P
Sbjct: 82 VNKAQP 87
>SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)
Length = 442
Score = 29.9 bits (64), Expect = 0.80
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -3
Query: 195 PELEVHISKSFAMSSTFFLRKVQFMHRAKTFDKVINISFNCKI 67
P+L V ++ FA +S F ++++F+ F ++N +NC +
Sbjct: 179 PQLIVKVTSKFAETSCFGEKRLKFIRHNTLFVLLLNSDWNCTV 221
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 112 GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG-HGYDHLILNVEWSKPPQNN 288
GP+ + + +K+TG + F +V F A + L+G YD I NV KP NN
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAI-NV---KPQSNN 536
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 133 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 285
+ K+ + KGF +V F R DAAKAI ++ + W+ N
Sbjct: 544 VVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN 288
FG V + +K T K F +V + A AIQ +NG L V+ +P N
Sbjct: 285 FGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDAN 344
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 67 NFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK--GFAYVHFKFRADAAKAIQSLNG 231
+F V AD++ + G H + + + + GF +V F A+A KA + LNG
Sbjct: 90 SFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFVTFNTAAEANKAREKLNG 146
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 88 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 267
I +L G V +A + G +GFA+V + +A K ++ NG + + V +
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRVAY 281
Query: 268 SKP 276
P
Sbjct: 282 GSP 284
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 115 PVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
P++ + L K+K TG +GF +V +A + ++
Sbjct: 435 PIYDIRLIKDKVTGTSRGFCFVELATIEEATQLLE 469
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 26.6 bits (56), Expect = 7.4
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Frame = -3
Query: 324 YLFKFVYKWNFLIVLWRLRPFHVQNQMII--TMTI---K*LNCFR---SICPEL--EVHI 175
++ FVY W +V+ L P V MII MT+ K LN + ++ E+ +
Sbjct: 428 FVIGFVYSWKLTLVMMSLTPLMVIAGMIIGKVMTVFTNKELNAYAKAGAVAEEVLSSIRT 487
Query: 174 SKSFAMSSTFFLRKVQFMHRAKTF 103
+F ++R F+ A++F
Sbjct: 488 VAAFGGEGKEYIRYDSFLDEARSF 511
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,287,581
Number of Sequences: 59808
Number of extensions: 182891
Number of successful extensions: 599
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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