Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H24
(398 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 77 3e-15
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 71 2e-13
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 52 2e-07
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 48 2e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 48 3e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 48 3e-06
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 45 2e-05
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 45 2e-05
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 45 2e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 43 7e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 43 7e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 42 1e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 41 3e-04
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 40 5e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 6e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 40 6e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 40 6e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 40 6e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 8e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 40 8e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 40 8e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 40 8e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.002
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 38 0.002
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 38 0.002
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.003
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 38 0.003
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 37 0.006
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 37 0.006
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 37 0.006
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 37 0.006
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.006
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.006
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.006
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.008
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 36 0.008
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.010
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 36 0.013
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 35 0.017
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 35 0.017
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 35 0.017
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 35 0.017
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 35 0.017
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 35 0.017
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 35 0.017
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 35 0.017
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 35 0.017
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 35 0.017
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.023
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 35 0.023
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 35 0.023
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 34 0.030
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 34 0.030
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 34 0.030
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.030
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.040
At5g51300.2 68418.m06360 splicing factor-related contains simila... 33 0.053
At5g51300.1 68418.m06359 splicing factor-related contains simila... 33 0.053
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.053
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.053
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.053
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.053
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 33 0.053
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.070
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.070
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 33 0.070
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 33 0.070
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 33 0.070
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.070
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.093
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 32 0.12
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 32 0.12
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 32 0.16
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 32 0.16
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 32 0.16
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 32 0.16
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 31 0.21
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 31 0.21
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 0.21
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 31 0.21
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR... 31 0.21
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.37
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 30 0.49
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 0.65
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 30 0.65
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 0.65
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 0.65
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 30 0.65
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 29 0.86
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 0.86
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 0.86
At1g71410.1 68414.m08247 protein kinase family protein contains ... 29 0.86
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 0.86
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 0.86
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 1.1
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 1.1
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 1.1
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 1.1
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 1.1
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 1.1
At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ... 29 1.5
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 28 2.0
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 2.0
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 2.0
At1g22870.1 68414.m02855 protein kinase family protein contains ... 28 2.0
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof... 28 2.6
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 27 3.5
At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1... 27 3.5
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 27 3.5
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 27 3.5
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 27 4.6
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 27 4.6
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 27 6.1
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 27 6.1
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 27 6.1
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 27 6.1
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 27 6.1
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 27 6.1
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 27 6.1
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 27 6.1
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 27 6.1
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 26 8.0
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 77.4 bits (182), Expect = 3e-15
Identities = 35/75 (46%), Positives = 51/75 (68%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
++NLS E D+ +L FG V ++Y+A ++ TG +GF +V+F R DA +AI LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 232 HGYDHLILNVEWSKP 276
+GYD+LIL VEW+ P
Sbjct: 277 YGYDNLILRVEWATP 291
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 71.3 bits (167), Expect = 2e-13
Identities = 33/75 (44%), Positives = 48/75 (64%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
++NLS D+ +L + FG V + ++A ++ T +GF +V F R DA +AI LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 232 HGYDHLILNVEWSKP 276
+GYD+LIL VEWS P
Sbjct: 238 YGYDNLILRVEWSTP 252
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I NL A +DI + G V +++ K TG KGFA+V F + DAA AI+ NG
Sbjct: 335 IRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
Query: 232 HGYDHLILNVEWSKP 276
H + + V+W+ P
Sbjct: 395 HMFGKRPIAVDWAVP 409
Score = 43.6 bits (98), Expect = 5e-05
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 49 CISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
C+S L A +++ GPV + +L K + +GFA+V F + D +AI+ N
Sbjct: 23 CVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKN 82
Query: 229 G 231
G
Sbjct: 83 G 83
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 48.0 bits (109), Expect = 2e-06
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 61 LSNFAVEADIDDLVKGFGPVHKLYLA--KEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 234
+ N A DDL FG K+ A + G KGF +V+F+ DAA+A++SLNGH
Sbjct: 33 VKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGH 92
Query: 235 GYD 243
+D
Sbjct: 93 KFD 95
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 47.6 bits (108), Expect = 3e-06
Identities = 22/82 (26%), Positives = 47/82 (57%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ N++ D+ L +G V +++ +++ TG +GFA+V +K++ +A KA++ L+G
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
Query: 232 HGYDHLILNVEWSKPPQNN*KV 297
D + V+++K N K+
Sbjct: 80 RVVDGREITVQFAKYGPNAEKI 101
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 47.6 bits (108), Expect = 3e-06
Identities = 22/82 (26%), Positives = 47/82 (57%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ N++ D+ L +G V +++ +++ TG +GFA+V +K++ +A KA++ L+G
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
Query: 232 HGYDHLILNVEWSKPPQNN*KV 297
D + V+++K N K+
Sbjct: 80 RVVDGREITVQFAKYGPNAEKI 101
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
I NL A D+ D + FGP+ +YL + TG +GF +V +++ DAA+A++ +N
Sbjct: 51 IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMN 109
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +LS EA + ++ FG V + +A +++ +G YV FK RADA KA ++G
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161
Query: 232 HGYDHLILNVEWSKPPQNN*KVP 300
D ++ ++ PP+ P
Sbjct: 162 AQIDGKVVKATFTLPPRQKVSSP 184
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +LS EA + ++ FG V + +A +++ +G YV FK RADA KA ++G
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161
Query: 232 HGYDHLILNVEWSKPPQNN*KVP 300
D ++ ++ PP+ P
Sbjct: 162 AQIDGKVVKATFTLPPRQKVSSP 184
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 43.2 bits (97), Expect = 7e-05
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL + + D+ + FGPV +YL ++ TG +GF ++ F ADAA+A ++G
Sbjct: 41 VRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDG 100
Query: 232 H 234
+
Sbjct: 101 Y 101
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.2 bits (97), Expect = 7e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL + + D+ + FGPV +YL ++ TG +GF +V F ADAA A ++G
Sbjct: 40 VRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDG 99
Query: 232 H 234
+
Sbjct: 100 Y 100
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 42.3 bits (95), Expect = 1e-04
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
I L E D+ DL + G + ++ L K++ +G KG+A+V FK + A KAI+ L+
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELH 178
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ N+ + +L + G V K+ K G + F +VH+ R+ A KA++
Sbjct: 296 VKNIPENTSTEQLKELFQRHGEVTKIVTPPGK--GGKRDFGFVHYAERSSALKAVKDTER 353
Query: 232 HGYDHLILNVEWSKP 276
+ + L V +KP
Sbjct: 354 YEVNGQPLEVVLAKP 368
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+S LS E + D + FG + + + +K KGFA++ ++ +A KAIQ ++G
Sbjct: 81 VSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHG 140
Query: 232 HGYDHLILNVEWSK 273
D ++ VE +K
Sbjct: 141 KFLDGRVIFVEEAK 154
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 40.7 bits (91), Expect = 3e-04
Identities = 19/73 (26%), Positives = 39/73 (53%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+S + E DI + FG + L L ++ +G+ KG+A + ++ + +A AI ++NG
Sbjct: 99 VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
Query: 232 HGYDHLILNVEWS 270
++V+W+
Sbjct: 159 AELLTQNVSVDWA 171
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 40.3 bits (90), Expect = 5e-04
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +1
Query: 58 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 237
+++N ++L K F + ++ K +T KG+ YV FK R A +A+Q + G
Sbjct: 240 SVANLDQNVTEEELKKAFSQLGEVIYVKIPAT---KGYGYVQFKTRPSAEEAVQRMQGQV 296
Query: 238 YDHLILNVEWSKPP 279
+ + WSK P
Sbjct: 297 IGQQAVRISWSKNP 310
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ V + + STG KG+ +V F ++ +A+ +NG
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 39.9 bits (89), Expect = 6e-04
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ-SLN 228
+ NL E + + + FGPV + L + TG CKGF ++ F + + +KA Q +LN
Sbjct: 269 VGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF-VQLEHSKAAQIALN 327
Query: 229 G 231
G
Sbjct: 328 G 328
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 39.9 bits (89), Expect = 6e-04
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS A + L + G V + + +K TG +GF +V A+ A Q NG
Sbjct: 103 VGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNG 162
Query: 232 HGYDHLILNVEWSKPP 279
+ ++ L V PP
Sbjct: 163 YEFEGRPLRVNAGPPP 178
Score = 34.7 bits (76), Expect = 0.023
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS + +++L G V + + ++ +G KGF +V + KAI SLNG
Sbjct: 253 VGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 312
Query: 232 HGYDHLILNVE--WSKPPQ 282
D + V ++PP+
Sbjct: 313 ADLDGRQIRVSEAEARPPR 331
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 39.9 bits (89), Expect = 6e-04
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS A + L + G V + + +K TG +GF +V A+ A Q NG
Sbjct: 103 VGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNG 162
Query: 232 HGYDHLILNVEWSKPP 279
+ ++ L V PP
Sbjct: 163 YEFEGRPLRVNAGPPP 178
Score = 34.7 bits (76), Expect = 0.023
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS + +++L G V + + ++ +G KGF +V + KAI SLNG
Sbjct: 261 VGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 320
Query: 232 HGYDHLILNVE--WSKPPQ 282
D + V ++PP+
Sbjct: 321 ADLDGRQIRVSEAEARPPR 339
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 39.9 bits (89), Expect = 6e-04
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I LS E + D FG V ++ +A +K +G +GF +V F DA A +++G
Sbjct: 45 IGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDG 104
Query: 232 HG 237
G
Sbjct: 105 KG 106
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 39.5 bits (88), Expect = 8e-04
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +1
Query: 46 SCISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 225
+C+SN A D L + F P +L K++ T KGF ++ F+ DA KA+++L
Sbjct: 71 TCVSNSGLSAYTTD-QSLRQLFAPFARLI--KDQQTQRPKGFGFITFESEDDAQKALKAL 127
Query: 226 NGHGYDHLILNVEWSK 273
NG + ++ VE +K
Sbjct: 128 NGKIVNGRLIFVETAK 143
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.5 bits (88), Expect = 8e-04
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +1
Query: 73 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
A E D+ G V ++ + +EK +G KG+A+V F+ + AA+AI +LN
Sbjct: 103 ATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLN 154
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/75 (20%), Positives = 32/75 (42%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I NL + + L + G + K+ + K + +VH+ R +A+++
Sbjct: 272 IKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTER 331
Query: 232 HGYDHLILNVEWSKP 276
+ D +L+ +KP
Sbjct: 332 YEIDGHMLDCTLAKP 346
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 39.5 bits (88), Expect = 8e-04
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ L + E I +L++ FGP+ L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 379 VGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNG 438
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 39.5 bits (88), Expect = 8e-04
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS + +++ + FG + ++ G KGF +V+F+ DAA+A+ +LNG
Sbjct: 228 VKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNG 286
Query: 232 HGYD 243
+D
Sbjct: 287 KTFD 290
Score = 30.3 bits (65), Expect = 0.49
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I NL + + FGP+ +A + S G KG+ +V + A AI LNG
Sbjct: 137 IKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNG 195
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 240
FGPV +Y+ ++ +G +GFA+V F DA +A +S+N +
Sbjct: 70 FGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSF 113
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/69 (27%), Positives = 40/69 (57%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ LS + E D+ ++ +GP+H + + +E+++G +GFA++ F DAA+ +
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFP-TVDAARTMMDRIE 360
Query: 232 HGYDHLILN 258
H D ++L+
Sbjct: 361 H--DGIVLD 367
Score = 36.7 bits (81), Expect = 0.006
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 115 PVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH--LILNVEWSK 273
P+ L L ++K T +GFA+VHF DA KA+++ N + IL V ++K
Sbjct: 483 PIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +S + E + +G V K+ + +K KGFAYV F + +A KA+ LN
Sbjct: 25 VKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNA 84
Query: 232 HGYDHLILNVEWSKPPQNN 288
D ++ ++ +K ++N
Sbjct: 85 QLVDGRVVILDTTKAAKHN 103
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.5 bits (83), Expect = 0.003
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 76 VEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 252
+++D + D + FG + + K++STG +GF YV F DA A++ H + I
Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK--GEHFLGNRI 71
Query: 253 LNVEWSKPPQ 282
L V+ + P +
Sbjct: 72 LEVKVATPKE 81
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+S LS + D FG + + ++ +G KGF +V + DA KA +N
Sbjct: 38 VSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNA 97
Query: 232 HGYDHLILNVEWSKP 276
D ++ V+ ++P
Sbjct: 98 KFLDGWVIFVDPARP 112
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 36.7 bits (81), Expect = 0.006
Identities = 15/56 (26%), Positives = 35/56 (62%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 276
FG + ++ L K+++ KG+A++ F + DA AI++++ Y+ ++ ++ +KP
Sbjct: 63 FGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKP 118
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 36.7 bits (81), Expect = 0.006
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL E +++DL +GPV ++ L K G+A+V F+ DA AI +G
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDG 67
Query: 232 HGYDHLILNVE 264
+ +D L VE
Sbjct: 68 YDFDGHHLRVE 78
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 36.7 bits (81), Expect = 0.006
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL E +++DL +GPV ++ L K G+A+V F+ DA AI +G
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDG 67
Query: 232 HGYDHLILNVE 264
+ +D L VE
Sbjct: 68 YDFDGHHLRVE 78
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 36.7 bits (81), Expect = 0.006
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+ +L E+ + DL PVH L + ++ T G+AYV+F DA++A++SLN
Sbjct: 49 VGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLN 106
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I NL + + FG + +A + G KG+ +V F+ A AI LNG
Sbjct: 136 IKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNG 194
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.006
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL E +++DL +GPV ++ L K G+A+V F DA AI +G
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 232 HGYDHLILNVE 264
+ +D L VE
Sbjct: 68 YDFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.7 bits (81), Expect = 0.006
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL E +++DL +GPV ++ L K G+A+V F DA AI +G
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 232 HGYDHLILNVE 264
+ +D L VE
Sbjct: 68 YDFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.006
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL E +++DL +GPV ++ L K G+A+V F DA AI +G
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 232 HGYDHLILNVE 264
+ +D L VE
Sbjct: 68 YDFDGHRLRVE 78
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.3 bits (80), Expect = 0.008
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL E D+ + + FG V + + +++ TG CKGF +V F DA A+ +LNG
Sbjct: 289 VGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-NLNG 346
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 36.3 bits (80), Expect = 0.008
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +LS +A + D F + ++ TG +GF +V F+ + DA AI +NG
Sbjct: 152 VGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 211
Query: 232 HGYDHLILNVEWS 270
+ W+
Sbjct: 212 KWVSSRQIRCNWA 224
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 58 NLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 234
N+ E + ++ GP+ L K+KS+ + +VH+ R A+ AI +LNG
Sbjct: 69 NIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAIMTLNGR 123
Query: 235 GYDHLILNVEWS 270
+ V W+
Sbjct: 124 HIFGQPMKVNWA 135
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 35.9 bits (79), Expect = 0.010
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NL A + L + G V + + +K TG +GF +V ++ A Q NG
Sbjct: 95 VGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNG 154
Query: 232 HGYDHLILNVEWSKPP 279
+ D L V PP
Sbjct: 155 YELDGRPLRVNAGPPP 170
Score = 31.5 bits (68), Expect = 0.21
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS + ++ L G V + + ++ +G KGF +V + + AI+SL+G
Sbjct: 208 VGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267
Query: 232 HGYDHLILNVE--WSKPPQ 282
D + V ++PP+
Sbjct: 268 ADLDGRQIRVSEAEARPPR 286
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 35.5 bits (78), Expect = 0.013
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+S L+ + E+ I + +GP+ +++L ++ T KG+A++ + D A + +G
Sbjct: 142 VSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADG 201
Query: 232 HGYD--HLILNVEWSKPPQN 285
D ++++VE + N
Sbjct: 202 QKIDGRRVLVDVERGRTVPN 221
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.1 bits (77), Expect = 0.017
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 363 VGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.1 bits (77), Expect = 0.017
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 363 VGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.1 bits (77), Expect = 0.017
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 363 VGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 35.1 bits (77), Expect = 0.017
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL-N 228
+ N++ A + ++ L FG + + L K K+ G G+A+V F + +A A ++L +
Sbjct: 673 VKNIAFEATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQEALNAKKALAS 731
Query: 229 GHGYD-HLILNVEWS 270
H Y HL+L EW+
Sbjct: 732 THFYGRHLVL--EWA 744
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.1 bits (77), Expect = 0.017
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
E D+ + +G + + L ++K TG KGFA++ ++ + A+ +LNG
Sbjct: 49 EGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 35.1 bits (77), Expect = 0.017
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I+ LS + E + +GFG + ++ + +K + KG+A++ + A A++ +NG
Sbjct: 286 ITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNG 345
Query: 232 ---HGYDHLILNVEWSKPPQNN*KVP 300
+G+ ++++V +KP + N P
Sbjct: 346 KIINGW-MIVVDVAKTKPFRQNRSQP 370
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 35.1 bits (77), Expect = 0.017
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Frame = +1
Query: 55 SNLSNFAVEADI-DDLVKG----FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
+NL ++AD+ +DL++ FG + L +AK+++ C+G+A+V+F DA +A +
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAE 259
Query: 220 SLNG 231
++NG
Sbjct: 260 TVNG 263
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 35.1 bits (77), Expect = 0.017
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS + ++ +G + + ++ G + F +V+F+ DAA+A+++LNG
Sbjct: 229 VKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 232 HGYD 243
+D
Sbjct: 288 KKFD 291
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 35.1 bits (77), Expect = 0.017
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 103 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 35.1 bits (77), Expect = 0.017
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 103 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.023
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 61 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG--H 234
+ NF E DL + F ++ KS G+A+V+F+ DA AI+ L+
Sbjct: 6 VGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 235 GYDHLILNVEWSK 273
GY+ L+VEW+K
Sbjct: 61 GYEKRRLSVEWAK 73
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 34.7 bits (76), Expect = 0.023
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
++N+ A + + FG V K ++ + +TG G AY+ F R +AA+ SL+G
Sbjct: 520 VANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFT-RKEAAENALSLDG 578
Query: 232 HGYDHLILNVEWSKPPQN 285
+ IL + QN
Sbjct: 579 TSFMSRILKIVKGSNGQN 596
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 34.7 bits (76), Expect = 0.023
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ L + +A+I+ ++ +G V ++ E+ +G KG+ V F A AA + +NG
Sbjct: 206 VGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNG 265
Query: 232 HGYDHLILNVEWSKP 276
++ V ++ P
Sbjct: 266 FIFNGKACVVAFASP 280
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 34.3 bits (75), Expect = 0.030
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +L + +A+++ + +G V ++ EK++G KG+ V F A+ +LNG
Sbjct: 238 VGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNG 297
Query: 232 HGYDHLILNVEWSKP 276
+ ++ VE++ P
Sbjct: 298 YPFNGRPCVVEYASP 312
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 34.3 bits (75), Expect = 0.030
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I LS E + + G V + + ++ + KGF +V F +A KA+ NG
Sbjct: 38 IGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNG 97
Query: 232 HGYDHLILNVEWSKPPQN 285
+ + V+++K Q+
Sbjct: 98 QQLNGRTIFVDYAKAKQS 115
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 34.3 bits (75), Expect = 0.030
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 52 ISNL-SNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+ NL S E + D+ G + + L K KS G + FAY+ F+ +A AI +N
Sbjct: 6 VKNLPSKHVTEERLRDVFSRKGEIADVKL-KRKSDGKSRQFAYIGFRTEQEAQDAITYVN 64
Query: 229 GHGYDHLILNVEWSKPP 279
D ++VE + PP
Sbjct: 65 KCFIDTYRISVEVADPP 81
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 34.3 bits (75), Expect = 0.030
Identities = 15/57 (26%), Positives = 33/57 (57%)
Frame = +1
Query: 61 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
L+ + +++++ +G + +Y+A + C+G+A+V F + A AI++LNG
Sbjct: 214 LNKQTTKMEVNEVFSRYGIIEDIYMALDDMK-ICRGYAFVQFSCKEMALAAIKALNG 269
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.040
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
E + D L K F +AK +K TG KG+ +V F AD A A++ +NG
Sbjct: 147 EVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNG 200
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 33.5 bits (73), Expect = 0.053
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 94 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD--HLILNVEW 267
+L FG + + K++ TG KG+ +V + A A+Q++NG+ ++ L + +
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAG 557
Query: 268 SKPP 279
PP
Sbjct: 558 KSPP 561
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 33.5 bits (73), Expect = 0.053
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 94 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD--HLILNVEW 267
+L FG + + K++ TG KG+ +V + A A+Q++NG+ ++ L + +
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAG 557
Query: 268 SKPP 279
PP
Sbjct: 558 KSPP 561
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.5 bits (73), Expect = 0.053
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 258
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 259 V 261
V
Sbjct: 79 V 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.5 bits (73), Expect = 0.053
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 258
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 259 V 261
V
Sbjct: 79 V 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.5 bits (73), Expect = 0.053
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 258
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 259 V 261
V
Sbjct: 79 V 79
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 33.5 bits (73), Expect = 0.053
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 243
E I+ FG V + ++ TG KGF +V FK AI +NG D
Sbjct: 57 EQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELD 111
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 33.5 bits (73), Expect = 0.053
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLY----LAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
+ +LS +A + D F Y + ++ TG +GF +V F+ + DA AI
Sbjct: 152 VGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 211
Query: 220 SLNGHGYDHLILNVEWS 270
+NG + W+
Sbjct: 212 EMNGKWVSSRQIRCNWA 228
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 58 NLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 234
N+ E + ++ GP+ L K+KS+ + +VH+ R A+ AI +LNG
Sbjct: 69 NIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAIMTLNGR 123
Query: 235 GYDHLILNVEWS 270
+ V W+
Sbjct: 124 HIFGQPMKVNWA 135
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.1 bits (72), Expect = 0.070
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 61 LSNFAVEADIDDLVKGF---GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ A D D L + F G V + ++ TG +GF +V F A+ AIQ+L+G
Sbjct: 44 IGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDG 103
Query: 232 HGYDHLILNVEWS 270
++ V ++
Sbjct: 104 RDLHGRVVKVNYA 116
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 33.1 bits (72), Expect = 0.070
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +LS E D+ D PV ++L + TG +AY++F A+ A+ LN
Sbjct: 25 VGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNH 84
Query: 232 HGYDHLILNVEWSK 273
+ + WS+
Sbjct: 85 SDLKGKAMRIMWSQ 98
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 33.1 bits (72), Expect = 0.070
Identities = 17/73 (23%), Positives = 31/73 (42%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +LS +A + F + ++ TG +GF +V F+ + DA AI +NG
Sbjct: 148 VGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 207
Query: 232 HGYDHLILNVEWS 270
+ W+
Sbjct: 208 KWLSSRQIRCNWA 220
Score = 31.5 bits (68), Expect = 0.21
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+ N+ E + ++ GPV L K+KS+ + +VH+ R AA AI SLN
Sbjct: 63 VGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALAILSLN 117
Query: 229 GHGYDHLILNVEWS 270
G + V W+
Sbjct: 118 GRHLFGQPIKVNWA 131
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.1 bits (72), Expect = 0.070
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
FG + + + +K+TG KG+ +V FK A +A Q++N
Sbjct: 45 FGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 33.1 bits (72), Expect = 0.070
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ N+ A E + ++ GPV L ++ TG KG+ + +K A A ++L
Sbjct: 13 VGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQS 72
Query: 232 HGYDHLILNVEWSK 273
+ + L V++++
Sbjct: 73 YEINGRQLRVDFAE 86
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.1 bits (72), Expect = 0.070
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
+G V + +AKEK TG +GF +V F D KA++
Sbjct: 29 YGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.093
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 237
+ D+ FG V + ++ +G +GF +V FK AI+ +NG G
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSG 71
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 32.3 bits (70), Expect = 0.12
Identities = 17/77 (22%), Positives = 38/77 (49%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I L+ + + D + +G + + + +K +G +GF ++ F + +AI ++NG
Sbjct: 11 IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNG 70
Query: 232 HGYDHLILNVEWSKPPQ 282
D + V+ ++P Q
Sbjct: 71 MDLDGRTITVDKAQPHQ 87
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 32.3 bits (70), Expect = 0.12
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+ N+ E + ++ G GPV L KEKS+ + +VH+ R A AI SLN
Sbjct: 58 VGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-----YGFVHYFDRRSAGLAILSLN 112
Query: 229 GHGYDHLILNVEWS 270
G + V W+
Sbjct: 113 GRHLFGQPIKVNWA 126
Score = 29.9 bits (64), Expect = 0.65
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 270
++ TG +GF +V F+ + DA AI + G + W+
Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 163 KGFAYVHFKFRADAAKAIQSLNGHGY 240
KGF +V + +AA AIQ N H Y
Sbjct: 297 KGFGFVRYSTHVEAALAIQMGNTHSY 322
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.9 bits (69), Expect = 0.16
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ NLS + + + G+G V + +++ T +GF +V + ++A A+ ++G
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.9 bits (69), Expect = 0.16
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 55 SNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
+NLS AD+++ K G V + + + G +GF +V F +A KA++
Sbjct: 302 ANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.9 bits (69), Expect = 0.16
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 67 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 345 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 402
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.9 bits (69), Expect = 0.16
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 67 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 336 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 393
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.5 bits (68), Expect = 0.21
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ LS ++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.5 bits (68), Expect = 0.21
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ LS ++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 243
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 243
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 31.5 bits (68), Expect = 0.21
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 34 T*LPSCIS--NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 207
T LP +S N+SN +E +D +KG +H L L+ K +AD
Sbjct: 756 TELPVSVSHINISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDC 815
Query: 208 KAIQSLNGH 234
+++SLNGH
Sbjct: 816 DSLESLNGH 824
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 30.7 bits (66), Expect = 0.37
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 61 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG--H 234
+ NF + DL + F ++ KS G+A+V+F+ DA AI+ +
Sbjct: 6 VGNFDYDTRHSDLERLFSKFGRVKRVDMKS-----GYAFVYFEDERDAEDAIRRTDNTTF 60
Query: 235 GYDHLILNVEWSK 273
GY L+VEW+K
Sbjct: 61 GYGRRKLSVEWAK 73
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 166 GFAYVHFKFRADAAKAIQSLNG--HGYDHLILNVEWSK 273
G+A+V+F+ DA AI+ + GY L+VEW+K
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 47
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.9 bits (64), Expect = 0.65
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +1
Query: 91 DDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 270
DDL FG +L K + C +V + RA A +A+ LNG + + W
Sbjct: 292 DDLKSVFGQFGELVHVKIPAGKRC---GFVQYANRACAEQALSVLNGTQLGGQSIRLSWG 348
Query: 271 KPPQN 285
+ P N
Sbjct: 349 RSPSN 353
Score = 28.3 bits (60), Expect = 2.0
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +1
Query: 133 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +++TG KG+ +V F ++ +A+ +NG
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 29.9 bits (64), Expect = 0.65
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 103 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 282
+ FG V + +K+TG K F +V + +A A AI +NG L V+ +
Sbjct: 370 QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSN 429
Query: 283 N 285
N
Sbjct: 430 N 430
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 0.65
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 163 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 285
KG +V F R +A +A++ LNG + + W + P N
Sbjct: 341 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPAN 381
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +TG KG+ +V F + KA+ +NG
Sbjct: 234 DANTGRSKGYGFVRFGDENERTKAMTEMNG 263
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.9 bits (64), Expect = 0.65
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 163 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 285
KG +V F R +A +A++ LNG + + W + P N
Sbjct: 339 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPAN 379
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +TG KG+ +V F + KA+ +NG
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNG 261
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 29.9 bits (64), Expect = 0.65
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 157 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 267
H KG YVH++ A A QS+NG + +N E+
Sbjct: 333 HLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEF 369
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 29.5 bits (63), Expect = 0.86
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 163 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 279
KG +V F R A AI+SLNG + + W + P
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP 394
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +TG KG+ +V F + ++A+ +NG
Sbjct: 237 DSNTGRSKGYGFVRFGDENERSRALTEMNG 266
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At1g71410.1 68414.m08247 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 909
Score = 29.5 bits (63), Expect = 0.86
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 65 AILQLKLILMTLSKVLALCINCTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 217
A+L L ++ TL K A+ I T++R +D + LMCT + + KQ+
Sbjct: 524 ALLCLAELVQTLDKPAAIEILETIQRCTAVDRSAPTLMCTLAVANAILKQY 574
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 29.5 bits (63), Expect = 0.86
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
I NL + + FG + +A + TG KG+ +V F+ A AI LNG
Sbjct: 140 IKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNG 198
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN 79
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKG-FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+ +L+ + + D K +G V + +++TG KG+ +V F + +A+ +N
Sbjct: 158 VGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMN 217
Query: 229 G 231
G
Sbjct: 218 G 218
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 186
I +S E + D FG V + + K+++TG +GF +V F
Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 186
I +S E + D FG V + + K+++TG +GF +V F
Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 255
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 256 NVEWSKP 276
+ + P
Sbjct: 76 EAKKAVP 82
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 255
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 256 NVEWSKP 276
+ + P
Sbjct: 76 EAKKAVP 82
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +1
Query: 76 VEADID-----DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
V ADID + FG + + L +K+TG KGFA ++ A KA++
Sbjct: 234 VSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 538
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 160 CKGFAYVHFKFRADAAKAIQSLNG 231
CKGFA+V FK DA + ++ G
Sbjct: 232 CKGFAHVDFKTEIDANRFVKQFTG 255
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.3 bits (60), Expect = 2.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
E++TG +GF ++ F+ + A+ ++NG
Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNG 282
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
FG V ++ + +EK+TG +GF +V F A + +Q
Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +1
Query: 76 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLIL 255
+++ + FG + ++++ TG G+AY+ K A+ A + + G+D ++
Sbjct: 250 IKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELGRHDVGGWDLVVG 309
Query: 256 NVE 264
E
Sbjct: 310 KAE 312
>At1g22870.1 68414.m02855 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 913
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 65 AILQLKLILMTLSKVLALCINCTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 217
A+L L ++ TL K+ I T++R +D + LMCT + + KQ+
Sbjct: 524 ALLCLAELVQTLDKLAVTEILQTIQRCTAVDRSAPTLMCTLAIANAILKQY 574
>At5g37040.1 68418.m04442 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 242
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = -3
Query: 267 PFHVQNQMIITMTIK*LNCFRSICPELEVHISKSFAMSSTFFLRKVQFMHRAKTFDKVIN 88
P ++ +++ + + L+CFRS+C E ++ F +F+ KT + +
Sbjct: 7 PLDLEEEILFRVPPRSLHCFRSVCKEWNALSRDKRLINKNFACAPPEFI--LKTRSNIYS 64
Query: 87 ISFN 76
IS N
Sbjct: 65 ISVN 68
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 27.5 bits (58), Expect = 3.5
Identities = 19/74 (25%), Positives = 38/74 (51%)
Frame = +1
Query: 55 SNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 234
S+L ++ ++ G V ++++ ++ TG +GFAY+ D +A+Q L+G
Sbjct: 488 SSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQ-LSGS 544
Query: 235 GYDHLILNVEWSKP 276
++VE S+P
Sbjct: 545 EIGGGNIHVEESRP 558
>At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1
[Coturnix coturnix] GI:10441650, Yippee protein
[Drosophila melanogaster] GI:5713279; contains Pfam
profile PF03226: Yippee putative zinc-binding protein
Length = 128
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 165 FAMSSTFFLRKVQFMH-RAKTFDKVINISFNCKIAKV*YTGW 43
FA+++ + H RA FD V+N++ K +V TGW
Sbjct: 23 FAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVMITGW 64
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 109 FGPVHKLYLAKEKSTGHCKGFAYVHFKFR-ADAAKAIQSLNGHGYDHLI 252
FG + + LA +++ +G AYV FK + ADA K ++G GY I
Sbjct: 11 FGEIIHVQLAIDRAANLSRGDAYVEFKAKIADAEKPQLYMDG-GYPRRI 58
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 163 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 279
KG +V F R A +AI +LNG + + W + P
Sbjct: 362 KGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP 400
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +TG KG+ +V F + ++A+ +NG
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTEMNG 277
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
++ TG KG+ +V F ++ +A+ +NG
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNG 219
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
++ TG KG+ +V F ++ +A+ +NG
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNG 219
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 228
+ N+ ++ + G VH++ + +K G KGFAYV F +A + LN
Sbjct: 96 VGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEF-VEVEAVQEALQLN 152
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 186
E + D +G V + + ++++TG +GF ++ F
Sbjct: 19 EERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 186
E + D +G V + + ++++TG +GF ++ F
Sbjct: 19 EERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 79 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 186
E + D +G V + + ++++TG +GF ++ F
Sbjct: 19 EERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 61 LSNFAVEADIDDLV---KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
+SN E D L+ FG + + L +K TG KGF +K A +A++
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 61 LSNFAVEADIDDLV---KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
+SN E D L+ FG + + L +K TG KGF +K A +A++
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 61 LSNFAVEADIDDLV---KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 219
+SN E D L+ FG + + L +K TG KGF +K A +A++
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 88 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 207
I+D +K FGP++ + + K +G FA+V F+ +AD A
Sbjct: 761 IEDALKKFGPINAISIIK---SGPLYKFAFVDFE-KADVA 796
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 142 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 231
+ +TG KG+ +V F + KA+ +NG
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNG 261
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 52 ISNLSNFAVEADIDDLVKGFGPV-HKLYLAKEKSTGHCKGFAYVHF-KFRADAAKAIQSL 225
I NL E + D FG + + ++ TG+ +GF ++ + F A A AI+S+
Sbjct: 116 IGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDA-AIESM 174
Query: 226 NGHGYDHLILNVEWS 270
G + + V ++
Sbjct: 175 TGQYLSNRQITVSYA 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,151,468
Number of Sequences: 28952
Number of extensions: 128585
Number of successful extensions: 560
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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