Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H22
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   1e-13
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        35   0.034
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 36/90 (40%), Positives = 47/90 (52%)
 Frame = +3

Query: 150 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXX 329
           +T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI  + +G                
Sbjct: 23  ITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI--LSAGAPGAGGAVAAAPAAGG 80

Query: 330 XXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
                              SDDDMGFGLFD
Sbjct: 81  EAKAEEKKEEAKKEESEEESDDDMGFGLFD 110



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVA 148
           M S +ELACVYSALIL DDDVA
Sbjct: 1   MASTSELACVYSALILHDDDVA 22


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 263 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGN 165
           DQ+  I+ F+  G++ WP +  + S R + GG+
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGS 134


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 387 SDDDMGFGLFD 419
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 231 LWRTDLANMALHLQPPLSRWWKFSHQLXATSSSTRM 124
           LW TDL + +   QPP  R W  +HQ  A   + R+
Sbjct: 116 LWHTDLLS-SRQRQPPPERNWYQAHQATAKFFTRRL 150


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 272  DVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSY 150
            D+G +VT +      G  T   W+ +YS    D G+F T Y
Sbjct: 2100 DLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFTEY 2139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,265,879
Number of Sequences: 59808
Number of extensions: 197065
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)