Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H22
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    81   3e-16
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    78   4e-15
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   2.6  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated p...    27   7.9  
M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.        27   7.9  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 42/90 (46%), Positives = 52/90 (57%)
 Frame = +3

Query: 150 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXX 329
           +TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LIT++ SG                
Sbjct: 23  ITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAAAAAPA 81

Query: 330 XXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
                              SDDDMGFGLFD
Sbjct: 82  AGGAAPAAETKKKEEPKEESDDDMGFGLFD 111



 Score = 35.5 bits (78), Expect = 0.023
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVA 148
           M S  ELACVY+ALIL DD+VA
Sbjct: 1   MASNQELACVYAALILQDDEVA 22


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 41/90 (45%), Positives = 51/90 (56%)
 Frame = +3

Query: 150 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXX 329
           +TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LIT++ SG                
Sbjct: 23  ITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAAAAAPA 81

Query: 330 XXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
                              SDDDMGFGLFD
Sbjct: 82  AGGAAPAAETKKKEEPKEESDDDMGFGLFD 111



 Score = 35.5 bits (78), Expect = 0.023
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVA 148
           M S  ELACVY+ALIL DD+VA
Sbjct: 1   MASNQELACVYAALILQDDEVA 22


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 387 SDDDMGFGLFD 419
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 387 SDDDMGFGLFD 419
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 387 SDDDMGFGLFD 419
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 1   CSLFVRTQTCLFSLELRPTATCTFKTKNGVKS*ISMCLLCS 123
           CSLF R + CL +   + +  C+F +     + I +  +CS
Sbjct: 467 CSLFARYEQCLSATVFKNSQRCSFASPLNSLARIGLAPICS 507


>U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated
           protein 6 protein.
          Length = 612

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 134 DDDVAXNW*ENFHHLESGG-CRCRAILARSVRQSLGRHQC 250
           DD+V   +  +   L  GG C+C    +R +   +GR+ C
Sbjct: 271 DDEVKQRYFYSMGELAVGGRCKCNGHASRCIFDKMGRYTC 310


>M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.
          Length = 612

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 134 DDDVAXNW*ENFHHLESGG-CRCRAILARSVRQSLGRHQC 250
           DD+V   +  +   L  GG C+C    +R +   +GR+ C
Sbjct: 271 DDEVKQRYFYSMGELAVGGRCKCNGHASRCIFDKMGRYTC 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,183,521
Number of Sequences: 27780
Number of extensions: 155419
Number of successful extensions: 319
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)