Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H22
(510 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 64 4e-11
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 64 4e-11
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 61 5e-10
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 61 5e-10
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 60 1e-09
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 57 6e-09
At4g24175.1 68417.m03469 expressed protein 29 1.4
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi... 28 3.2
At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid... 27 5.5
At5g42950.1 68418.m05236 GYF domain-containing protein contains ... 27 7.3
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 7.3
At1g11290.1 68414.m01297 pentatricopeptide (PPR) repeat-containi... 27 9.7
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 64.5 bits (150), Expect = 4e-11
Identities = 34/92 (36%), Positives = 44/92 (47%)
Frame = +3
Query: 144 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 323
+ +T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+G
Sbjct: 21 IAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAA 80
Query: 324 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SD D+GFGLFD
Sbjct: 81 GGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 64.5 bits (150), Expect = 4e-11
Identities = 34/92 (36%), Positives = 44/92 (47%)
Frame = +3
Query: 144 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 323
+ +T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+G
Sbjct: 21 IAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAA 80
Query: 324 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SD D+GFGLFD
Sbjct: 81 GGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 60.9 bits (141), Expect = 5e-10
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 144 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS-GVXXXXXXXXXXXX 320
+ +T +KI+T++KAA V++E YWP LFAK E NV DLI N+G+ G
Sbjct: 21 IAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGGAPVSAAAPA 80
Query: 321 XXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SD D+GFGLFD
Sbjct: 81 AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 60.9 bits (141), Expect = 5e-10
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 144 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS-GVXXXXXXXXXXXX 320
+ +T +KI+T++KAA V++E YWP LFAK E NV DLI N+G+ G
Sbjct: 21 IAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGGAPVSAAAPA 80
Query: 321 XXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SD D+GFGLFD
Sbjct: 81 AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 59.7 bits (138), Expect = 1e-09
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 144 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS-GVXXXXXXXXXXXX 320
+ +T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+ G
Sbjct: 21 IAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAA 80
Query: 321 XXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SD D+GFGLFD
Sbjct: 81 GGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 57.2 bits (132), Expect = 6e-09
Identities = 32/92 (34%), Positives = 41/92 (44%)
Frame = +3
Query: 144 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 323
+ +T E IS ++K A V+VE YWP LFAK E N+ DLI N+G+G
Sbjct: 20 IEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMNVGAGGCGVARPVTTAAPT 79
Query: 324 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
S+DDM GLFD
Sbjct: 80 ASQSVSIPEEKKNEMEVIKEESEDDMIIGLFD 111
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 86 VSKAELACVYSALILVDDDV 145
+S +ELAC Y+ALIL DD +
Sbjct: 1 MSTSELACTYAALILHDDGI 20
>At4g24175.1 68417.m03469 expressed protein
Length = 306
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 129 WWMMMLPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRD 257
W M + +G+++ ILKAA++ E Y + AK L G +VR+
Sbjct: 102 WGMELASFSGDQVKQILKAASLGEEVYDALMLAKRL-GSDVRE 143
>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 850
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 77 LKMVSKAELACVYSALILVDDDVAXNW*ENFHHLESGGCRCR 202
L++ A Y + I +D D+ FHH ++G C C+
Sbjct: 807 LRVCGDCHTAFTYMSRI-IDHDIILRDSSRFHHFKNGSCSCK 847
>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
transport family protein weak similarity to SP|P25396
Tellurite resistance protein tehA. {Escherichia coli};
contains Pfam profile PF03595: C4-dicarboxylate
transporter/malic acid transport protein
Length = 635
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 126 SWWMMMLPVTGEKISTILKAAAV 194
SWW P+TG I+TI A V
Sbjct: 511 SWWAYTFPMTGAAIATIRYATVV 533
>At5g42950.1 68418.m05236 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1714
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 260 QVTDIDAFQGFGEQTWPIWLYIYSR-RFQDGGNFLTSYXQHHHPPG 126
QVT +G GE T ++ R R GG+ TS HPPG
Sbjct: 238 QVTSFSHSRGRGENTA---IFSAGRGRMSPGGSIFTSAPNQSHPPG 280
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 235 KALANRPGQYGSTSTAAAFKMVEIFSPVTGN 143
+ +N P + S TAA KM +I SP+TG+
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGS 312
>At1g11290.1 68414.m01297 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 809
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 68 RSKLKMVSKAELACVYSALILVDDDVAXNW*ENFHHLESGGCRC 199
R L++ + A Y +L+ + V + + FHH ++G C C
Sbjct: 763 RKNLRVCADCHNATKYISLVTGREIVVRDM-QRFHHFKNGACSC 805
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,718,369
Number of Sequences: 28952
Number of extensions: 147454
Number of successful extensions: 383
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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