Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H21
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 44 1e-04
At5g27220.1 68418.m03247 protein transport protein-related low s... 38 0.004
At3g28770.1 68416.m03591 expressed protein 38 0.006
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 38 0.006
At1g56660.1 68414.m06516 expressed protein 34 0.096
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 32 0.29
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 32 0.29
At5g62240.1 68418.m07815 expressed protein various predicted pro... 32 0.39
At5g64905.1 68418.m08164 expressed protein 30 1.2
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 30 1.2
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 30 1.6
At3g12190.1 68416.m01520 hypothetical protein 30 1.6
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family... 30 1.6
At5g51920.1 68418.m06441 expressed protein ; expression supporte... 29 2.1
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 29 2.7
At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident... 29 2.7
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 29 2.7
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 29 2.7
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 29 3.6
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi... 29 3.6
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 28 4.8
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 28 6.3
At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family pr... 28 6.3
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 28 6.3
At2g22795.1 68415.m02704 expressed protein 28 6.3
At2g11462.1 68415.m01231 hypothetical protein 28 6.3
At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putat... 28 6.3
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 28 6.3
At1g50830.1 68414.m05716 hypothetical protein 28 6.3
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 28 6.3
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 27 8.3
At5g18740.1 68418.m02224 expressed protein predicted proteins - ... 27 8.3
At5g17460.1 68418.m02049 expressed protein 27 8.3
At3g31540.1 68416.m04025 hypothetical protein 27 8.3
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 27 8.3
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 27 8.3
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 27 8.3
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 466 CPTILDVESSEQLKICQYNN-CKFIHDSXQFLNSKPKDIGDQCHVYKVRGKCPXGIACRY 642
CP V +E + CQY + C+F HD F K DI QC KC G++CR+
Sbjct: 109 CP---QVARTEDVDSCQYKDKCRFNHDIEAFKAQKADDIEGQCPFVASGMKCAYGLSCRF 165
Query: 643 GSDH 654
H
Sbjct: 166 LGSH 169
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 38.3 bits (85), Expect = 0.004
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +1
Query: 229 VCAIKDEY--VLQKSNIIEE--KSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDS 396
+C++KD Y LQ I E+ KS+ E +K+ +S F E K K +TE + +
Sbjct: 513 LCSVKDTYRECLQNWEIKEKELKSFQEEVKKIQDSLKDFQSKEAELVKLKESLTEHEKEL 572
Query: 397 KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHD 543
KK+ + KI K+ LD + EQLK + K + +
Sbjct: 573 GLKKKQIHVRSEKIELKDKKLDAREERLD-KKDEQLKSAEQKLAKCVKE 620
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +1
Query: 241 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 420
K ++ KS EE ++EK + S+ +D N + K +++ + ++D K KK +
Sbjct: 1102 KKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEE 1161
Query: 421 KSRPKIFKDGKESK 462
KS K + K K
Sbjct: 1162 KSETKEIESSKSQK 1175
Score = 34.7 bits (76), Expect = 0.055
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 265 SNIIEEKSYNLEKRKLDESSA--SFDDNNLEFKK-TKIEITEDKNDSKTKKRGQNKSRPK 435
S I++ K N + K E S +DNN+E K+ TK E+ KND ++K + K K
Sbjct: 644 SKIVDNKGGNADSNKEKEVHVGDSTNDNNMESKEDTKSEVEVKKNDGSSEKGEEGKENNK 703
Query: 436 IFKDGKE 456
+ K+
Sbjct: 704 DSMEDKK 710
Score = 34.7 bits (76), Expect = 0.055
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Frame = +1
Query: 259 QKSNIIEEKSYNLEKRKLDESSASFDDNNLEFK----KTKIEITEDKNDSKTKKRGQNKS 426
+ S + EE N EK++ E SAS + E++ KTK E ++K S+ KKR + S
Sbjct: 985 ENSKLKEENKDNKEKKE-SEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQDKKREEKDS 1043
Query: 427 RP-KIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSXQFLNSK 567
K K+ +ES+ E +++ K + + K D + ++K
Sbjct: 1044 EERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNK 1091
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/80 (25%), Positives = 40/80 (50%)
Frame = +1
Query: 259 QKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKI 438
+KS +E+S +L+ +K +E + ++ K K E ++ D+K+ K+ ++K K
Sbjct: 1046 RKSKKEKEESRDLKAKKKEEETKEKKESE-NHKSKKKEDKKEHEDNKSMKKEEDKKEKKK 1104
Query: 439 FKDGKESKPCPTILDVESSE 498
++ K K D+E E
Sbjct: 1105 HEESKSRKKEEDKKDMEKLE 1124
Score = 27.9 bits (59), Expect = 6.3
Identities = 25/89 (28%), Positives = 39/89 (43%)
Frame = +1
Query: 241 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 420
K+E +K E KS E+ K D +D N KK EDKN+ K + +
Sbjct: 1095 KEEDKKEKKKHEESKSRKKEEDKKDMEK--LEDQNSNKKK------EDKNEKKKSQHVKL 1146
Query: 421 KSRPKIFKDGKESKPCPTILDVESSEQLK 507
+ K+ KE++ ++ESS+ K
Sbjct: 1147 VKKESDKKEKKENEEKSETKEIESSKSQK 1175
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +1
Query: 217 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDD-NNLEFKKTKIEITEDKND 393
SN K++ S ++E + + ++ SAS DD +N E K K E+ ++K
Sbjct: 377 SNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADSASMDDRSNAEQPKEKEEVEKEKAK 436
Query: 394 SKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQL 504
K++G+ K K + KE LDV + E+L
Sbjct: 437 DTKKEKGKEKDSEKKMEHEKEKGKS---LDVANFERL 470
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 33.9 bits (74), Expect = 0.096
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Frame = +1
Query: 211 KNSNAGVCAIKDEYVLQKSNIIEEKSYNLE-KRKLDESSASFDDNNLEFKKTKIEITEDK 387
K S G +K++ +K N +E + + + K + E+ +D+ E KK+K+E E +
Sbjct: 368 KKSEKGEKDVKEDK--KKENPLETEVMSRDIKLEEPEAEKKEEDDTEEKKKSKVEGGESE 425
Query: 388 NDSKTKKRGQNKSR------PKIFKDGKESKPCPTILDVESSE 498
K KK+ + K++ PK+ +D +E K + +E S+
Sbjct: 426 EGKKKKKKDKKKNKKKDTKEPKMTEDEEEKKDDSKDVKIEGSK 468
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +1
Query: 241 KDEYVLQKSNIIEEKSYNLEKRK-LDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQ 417
K E V Q+ +EE+ K+K DES + +K + E ++ D K K + +
Sbjct: 158 KHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNEDKKVKGKKE 217
Query: 418 NKSRPKIFKDGKESKPCPTILDVESSEQ 501
+ + K+ +E K D E E+
Sbjct: 218 KGEKGDLEKEDEEKKKEHDETDQEMKEK 245
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 277 EEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKE 456
E++ Y LEKRK +E +F++ K K+ G NK + ++ D E
Sbjct: 655 EQRKYQLEKRKQEEELRRLKQEEEKFQRIK-------EQWKSSTPGSNKRKDRVEDDDGE 707
Query: 457 SKP 465
SKP
Sbjct: 708 SKP 710
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 277 EEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKE 456
E++ Y LEKRK +E +F++ K K+ G NK + ++ D E
Sbjct: 867 EQRKYQLEKRKQEEELRRLKQEEEKFQRIK-------EQWKSSTPGSNKRKDRVEDDDGE 919
Query: 457 SKP 465
SKP
Sbjct: 920 SKP 922
>At5g62240.1 68418.m07815 expressed protein various predicted
proteins, Arabidopsis thaliana; expression supported by
MPSS
Length = 366
Score = 31.9 bits (69), Expect = 0.39
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +1
Query: 352 FKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCK 531
+ +T ++++ K+ SKTK +RP +++KP LD+ S + L CQ + K
Sbjct: 108 YNQTVKDVSKKKSKSKTKTSNSTLTRPTASLLARQNKP----LDIYSVQLLTRCQRSLAK 163
Query: 532 FIHDSXQFLNSK 567
F + L SK
Sbjct: 164 FGENVAPVLVSK 175
>At5g64905.1 68418.m08164 expressed protein
Length = 96
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 319 SSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRP 432
SS S +D +++ K+ + E ED + K RG+NK++P
Sbjct: 48 SSHSEEDESIDIKEEEEEEEEDGMTIEIKARGKNKTKP 85
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 235 AIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSK 399
A ++E + + I EEK + +E++ D+N LE KK ++ E DSK
Sbjct: 447 ARREEALAEARQIREEKE---RSKTGEEANGVLDNNRLEKKKNSAQVLESSEDSK 498
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 241 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKND--SKTKKRG 414
KDE ++ +EK +++ ++ DE S DD+ + K+ + EDK + K+ KRG
Sbjct: 243 KDENEDKEEEKEDEKEESMDDKE-DEKEESNDDDKEDEKEESNDDKEDKKEDIKKSNKRG 301
Query: 415 QNKS 426
+ K+
Sbjct: 302 KGKT 305
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 238 IKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITED-KNDSKTKKRG 414
+ + V K ++++ + E+ K DE S DD E +++ + ED K +S K
Sbjct: 230 VAEPEVEDKKTESKDENEDKEEEKEDEKEESMDDKEDEKEESNDDDKEDEKEESNDDKED 289
Query: 415 QNKSRPKIFKDGK 453
+ + K K GK
Sbjct: 290 KKEDIKKSNKRGK 302
>At3g12190.1 68416.m01520 hypothetical protein
Length = 269
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = +1
Query: 241 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKR 411
K++++ ++S+ +E K LEKR + ++A + E K+ K++ + + +S+ KKR
Sbjct: 61 KEKHLEKRSHELESKGKILEKRAREINTADGFRRDFEEKQRKLDRLKREIESEEKKR 117
>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
protein similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1309
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 355 KKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESK 462
KK KI ++K+ +T + K RPK+ ++GK K
Sbjct: 185 KKRKIARNDEKSQLETPTLKRKKIRPKVVREGKTKK 220
>At5g51920.1 68418.m06441 expressed protein ; expression supported
by MPSS
Length = 570
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 262 KSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIE--ITEDKNDSKTKKRG 414
+S + E + EKR ++A F L+ +K+ +T KN SKTKK+G
Sbjct: 220 ESEAVSEINRVSEKRGAKVAAAEFSWPRLKLCSSKLRKLVTAGKNGSKTKKKG 272
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +1
Query: 202 INMKNSNAGVCAIKDEYVLQKSNIIE-EKSYNLEKRKLDESSASFDDNNLEFKKTKIEIT 378
I+++ + V E+ KS + EK Y R+ D+ DD E KK + E+
Sbjct: 238 ISLETTKWEVADADKEFRWLKSAVSSSEKEYEQISRRTDDIKLELDDERREKKKLEEELM 297
Query: 379 EDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTIL 480
E + + ++ G I + +E K C IL
Sbjct: 298 E--LNKELEELGSESVEAAIVRLQEEVKNCKNIL 329
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 298 EKRKLDESSASFDDNNLEFKKTKIEITEDKNDS--KTKKRGQNKSRPKIFKDGKESK 462
EK K D+ D + K+ K ++ ++K D K K+R + + + K KD +ES+
Sbjct: 77 EKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKERKEKERKAKEKKDKEESE 133
>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
identical to COP1-Interacting Protein 7 (CIP7)
GI:3327868 from [Arabidopsis thaliana]
Length = 1058
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 217 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKI---EITEDK 387
S A V K E ++ +EE +KR ++SS ++L KKT +
Sbjct: 750 SRAAVSKSKSEMEEERKKRMEELLIQRQKRIAEKSSGGSVSSSLASKKTPTVTKSVKSSI 809
Query: 388 NDSKTKKRGQNKSRP 432
+ KT + Q+K++P
Sbjct: 810 KNEKTPEAAQSKAKP 824
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 274 IEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPK 435
++ K N K+K +E D E KK K + +DK D K K + K K
Sbjct: 123 LQRKKENEAKKKEEEEKERKDMEKEEKKKDKEDKKKDKEDKKKAKVQKEKKEKK 176
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 259 QKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEI----TEDKNDSKTKKRGQNKS 426
QK N+I + N E+ + ++ E K++ ++ TE+K+ ++ ++ +
Sbjct: 1079 QKENVIAKAELNTEEDSFKKVEEIEKQDHGELKRSMVQAKRQETEEKDKTRAMEKNETVE 1138
Query: 427 RPKIFKDGKESK 462
R K KDG K
Sbjct: 1139 RRKQTKDGSLGK 1150
>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 499
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +1
Query: 268 NIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSR 429
++++E NLEK+ DE + D + + K+ E E+K + K+KK+ + KS+
Sbjct: 422 DVMKEVLENLEKK--DEGEKTVDASEKKKKRKTEEKEEEKEEEKSKKK-KKKSK 472
>At1g01440.1 68414.m00059 extra-large G-protein-related weak
similarity to extra-large G-protein (AtXLG1)
(GI:3201682) [Arabidopsis thaliana]
Length = 664
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/95 (26%), Positives = 40/95 (42%)
Frame = +1
Query: 217 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDS 396
SN AI Y + + +++SY + ES A+ D + T E +ED S
Sbjct: 427 SNVNRAAIT--YGMAQLGYYKQESYTKQDSLKSESVATETDVSYNEYYTNTEESEDSRIS 484
Query: 397 KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQ 501
K K G+ RP+ K E ++ S++Q
Sbjct: 485 KASKEGR---RPRNRKQSSEHSFAEVTNNISSNDQ 516
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 238 IKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLE----FKKTKIEITEDKNDSKTK 405
+ D V+QK N LEKR+ + S +FD N L F ++ EDKND ++K
Sbjct: 1080 VLDHLVIQKLNA----EGRLEKRETKKGS-NFDKNELSAILRFGAEEL-FKEDKNDEESK 1133
Query: 406 KR 411
KR
Sbjct: 1134 KR 1135
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +1
Query: 388 NDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNC--KFIHDSXQFLN 561
+D K ++ G K ++ +S+ C + S + C++N+ + + + +
Sbjct: 81 SDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQIGRERVR 140
Query: 562 SKPKDIGD----QCHVYKVRGKCPXGIACRY 642
+ +D+ + +C Y G C G +CR+
Sbjct: 141 ERDEDVENPKLMECKYYFRTGGCKYGESCRF 171
>At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 335
Score = 27.9 bits (59), Expect = 6.3
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Frame = +1
Query: 352 FKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCK 531
FKK K + TE K D KK+ +R + ++G+E K T + S++ +K ++ K
Sbjct: 91 FKKRKFD-TETK-DCNEKKKKMTMNRDDLVEEGEEEKSKITEQNNGSTKSIKKMKHKAKK 148
Query: 532 ----FIHDSXQFLNSKPKDIGDQCHVYKVRGK 615
F +DS + +K + D HV RG+
Sbjct: 149 EENNFSNDSSKV--TKELEKTDYIHVRARRGQ 178
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 27.9 bits (59), Expect = 6.3
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +1
Query: 223 AGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKI---EITEDKND 393
AG A +E K++ ++ KRK D+SS S + KTK E E+K
Sbjct: 418 AGAAAAPEEI---KADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVK 474
Query: 394 SKTKKRGQNKSRPKIFKDGKESK 462
S KK+ ++K K + G E K
Sbjct: 475 SSKKKKKKDKEEEKEEEAGSEKK 497
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +1
Query: 274 IEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGK 453
IE K K DE+ + ++ E + K T+D +S +++ ++K KI K+
Sbjct: 493 IESSFLEETKEKEDETKEKEESSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEEA 552
Query: 454 ESKPCPTILDVESSEQ 501
S+ + E+ E+
Sbjct: 553 SSQEESKENETETKEK 568
>At2g11462.1 68415.m01231 hypothetical protein
Length = 144
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 346 LEFKKTKIEITEDKNDSKTKKRGQNKSR 429
+E K+TK+E+ ED N+ +K +GQ +SR
Sbjct: 58 VEGKRTKLELKED-NEDVSKTKGQCESR 84
>At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putative
similar to IAA-alanine resistance protein 1 [Arabidopsis
thaliana] SWISS-PROT:Q9M647; contains ZIP Zinc
transporter domain, Pfam:PF02535; identical to cDNA
IAA-alanine resistance protein 1 mRNA GI:6942042
Length = 469
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +1
Query: 220 NAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSK 399
+AG +KDE +N+ ++ S + ++ S D +L +KT DK+DS
Sbjct: 242 HAGSKKLKDEG--DHNNLDQQSSSDAIVNSSEKVSGGSTDKSLRKRKTSASDATDKSDSG 299
Query: 400 TKKRGQNKS 426
T+ KS
Sbjct: 300 TEITSDGKS 308
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 241 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKR 411
+D+ +L+K N I++K LE KL E +F ++ E+ ED+N KKR
Sbjct: 298 RDDILLEKLNAIDKK---LEI-KLSELDHTFGKKGKRLEEEIRELAEDRNALTEKKR 350
>At1g50830.1 68414.m05716 hypothetical protein
Length = 768
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 241 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKK---TKIEITEDKNDSKTKKR 411
K++Y N + + S L KR + DD++ +K TKIE +++D T K
Sbjct: 587 KEKYSSNAENTLGDASETLGKRARRYMTVDSDDDSEPCQKLASTKIEQRSEEDDETTSK- 645
Query: 412 GQNKSRPKIFKD 447
+K+R +IF D
Sbjct: 646 -SHKTR-EIFND 655
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 277 EEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITE 381
EEK +LEK++L S +D E +K + E+T+
Sbjct: 463 EEKRLSLEKQQLLSDKESLEDLQQEIEKIRAEMTK 497
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Frame = +1
Query: 211 KNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKK---------T 363
K V ++E V + +IE+ +K+K S DD+ + K T
Sbjct: 126 KKKETKVKVTEEEKVKETDAVIEDGVKEKKKKKSKSKSVEADDDKEKVSKKRKRSEPEET 185
Query: 364 KIEITEDKNDSKTKKRGQN 420
K E +D +SK +K+ +N
Sbjct: 186 KEETEDDDEESKRRKKEEN 204
>At5g18740.1 68418.m02224 expressed protein predicted proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 609
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 298 EKRKLDESSASFDDNNLEFKKTKIEITEDKN-DSKTKKRGQNKSRPKIFKDGKESKPCPT 474
EKRK +E + N + + +++D+N DSK N + F GK+
Sbjct: 66 EKRKRNECGGICNTENRSMTEDVVNLSKDRNVDSKRSAFSDNGDATQEFGSGKQLPEVDC 125
Query: 475 ILDVESSEQL 504
D S+ Q+
Sbjct: 126 SKDPMSNAQV 135
>At5g17460.1 68418.m02049 expressed protein
Length = 309
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 283 KSYNL--EKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTK-KRGQNKSRPKIFKDGK 453
K YNL + D+ + +E T +ED+++ KTK + G+N+ +I K +
Sbjct: 53 KDYNLFGNVKPGDDDFRKTWEKEMEDDDTLWSGSEDESNDKTKQESGRNRLEKEIKKARQ 112
Query: 454 ESKPCPTILDVESSEQL 504
++K +D + S++L
Sbjct: 113 QAKDSTDQIDGDDSDEL 129
>At3g31540.1 68416.m04025 hypothetical protein
Length = 699
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 355 KKTKIEITEDKNDSKTKKRGQNKSRPKIFKD 447
K+ +I+ +E+K K KK+ + +P IF+D
Sbjct: 446 KRPQIDTSEEKRWKKKKKKLAKEDKPPIFED 476
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = +1
Query: 511 CQYNN-CKFIHD------SXQFLNSKPKDIGD-QCHVYKVRGKCPXGIACRY 642
C+Y + CKF H S + +S P+ + C Y GKC G++C++
Sbjct: 240 CKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGKCKFGLSCKF 291
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 472 TILDVESSEQLKICQYNNCKFIHDSXQFLNSKPKDIGDQ-CHVYKVRGKCPXGIACRY 642
+++ + SS++++ + K + LN P G++ C Y G C G +CRY
Sbjct: 14 SLVSIRSSDKIEDA-FRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRY 70
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 472 TILDVESSEQLKICQYNNCKFIHDSXQFLNSKPKDIGDQ-CHVYKVRGKCPXGIACRY 642
+++ + SS++++ + K + LN P G++ C Y G C G +CRY
Sbjct: 14 SLVSIRSSDKIEDA-FRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRY 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,571,827
Number of Sequences: 28952
Number of extensions: 204364
Number of successful extensions: 957
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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