Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H20
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           30   1.4  
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)                    28   7.2  

>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +1

Query: 136 IASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 279
           +A++N    G  P+   ++ D+  + P     F++++ G+AVFQ I+S
Sbjct: 128 LANQNKRFMGKSPRIGPKRPDE-KLTPRTTLFFVYLLFGAAVFQTIES 174


>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 552 KIHRKFYNRYLNVPNNLMYRRPVLTPVSVKETSSHD---CTVKGTNGRLR 412
           K+H  +Y  Y   PN + Y+RPV      ++  +HD    T + T  R++
Sbjct: 287 KLHSSYYEMY---PNKIAYKRPVTVEEIRRKYRAHDPSPATKRRTTDRIK 333


>SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 263 NTAEPHTTKMKRARSQGATGYWSSFSLVVLGTFPLIVMFL 144
           +TAEPHT   +  ++ G  G W  F +  L T PL+V  L
Sbjct: 138 STAEPHT---EMRQTSGCQGLWGQFIISALLT-PLVVHLL 173


>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
          Length = 561

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -2

Query: 567 IEKETKIHR----KFYNRYLNVPNNLMYRRPVLTPVSVKETSSHDCTVKGTNGRLRK 409
           I K+TK+ +       N  ++V  +  Y +  L  V+ K+T+  DC  KG+ G  RK
Sbjct: 469 ITKKTKMEKWTQQSLTNELVDVITSNEYYKKKLIFVNTKKTAKWDCIPKGSEGDGRK 525


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,731,818
Number of Sequences: 59808
Number of extensions: 381944
Number of successful extensions: 800
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)