BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fprWP01_F_H20 (634 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81095-2|CAB03157.1| 65|Caenorhabditis elegans Hypothetical pr... 91 5e-19 AF047660-4|AAM54169.1| 63|Caenorhabditis elegans Hypothetical ... 88 6e-18 Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 29 2.8 U70856-1|AAB09165.1| 327|Caenorhabditis elegans Hypothetical pr... 28 4.8 U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical pr... 28 4.8 Z81583-4|CAB04669.1| 323|Caenorhabditis elegans Hypothetical pr... 28 6.4 >Z81095-2|CAB03157.1| 65|Caenorhabditis elegans Hypothetical protein F59F4.2 protein. Length = 65 Score = 91.5 bits (217), Expect = 5e-19 Identities = 39/63 (61%), Positives = 51/63 (80%) Frame = +1 Query: 100 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 279 MAPKQRM +AN+ SKN+ RGNV K+ K ED+YP APWL+ LF+FVVCGSAVF+II+ Sbjct: 1 MAPKQRMTLANKQFSKNVNNRGNVAKSLKPAEDKYPAAPWLIGLFVFVVCGSAVFEIIRY 60 Query: 280 IRL 288 +++ Sbjct: 61 VKM 63 >AF047660-4|AAM54169.1| 63|Caenorhabditis elegans Hypothetical protein T09A12.5 protein. Length = 63 Score = 87.8 bits (208), Expect = 6e-18 Identities = 37/63 (58%), Positives = 49/63 (77%) Frame = +1 Query: 100 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 279 MAPKQRM +AN SKN+T RGNVPK K E ++P + WL+ LFIFVVCGSA+F++I+ Sbjct: 1 MAPKQRMAVANAQFSKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRY 60 Query: 280 IRL 288 I++ Sbjct: 61 IKV 63 >Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical protein F40G12.3 protein. Length = 1099 Score = 29.1 bits (62), Expect = 2.8 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Frame = +3 Query: 255 CCVPD--NPINKTSLNHEDNWRTA 320 CC P+ N +N S+ H NWRTA Sbjct: 136 CCFPEVVNYLNTHSVGHVKNWRTA 159 >U70856-1|AAB09165.1| 327|Caenorhabditis elegans Hypothetical protein F57F4.2 protein. Length = 327 Score = 28.3 bits (60), Expect = 4.8 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = -2 Query: 618 IHYIX-MEFVA*VVFKNYIEKETKIHRKFYNRYLNVPNNLMYRR-PVLTPVSVKETSSHD 445 +HYI ++FV +F++YI+ K YN YL + +R +++ + +TS D Sbjct: 256 MHYIKILKFVLIAIFQSYIQFLKKTKYILYNCYLTILTFKNFREFEIVSSYTTIQTSKID 315 Query: 444 C-TVKGTNGRLR 412 T K G+ R Sbjct: 316 SKTFKKLLGKFR 327 >U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical protein F42C5.4 protein. Length = 712 Score = 28.3 bits (60), Expect = 4.8 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = +3 Query: 168 CTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDNPINKTSLNHEDNW-RTAIENTIK*Q 344 C+ + ++P C T C L + + +C VP + I + ++ W R E T K + Sbjct: 113 CSHCHNDAKKPRFCVT---CGLQKKYLMMCRVPKDGIERDDAEEQEEWKRRQEEETRKSK 169 Query: 345 HY 350 Y Sbjct: 170 KY 171 >Z81583-4|CAB04669.1| 323|Caenorhabditis elegans Hypothetical protein T02G6.4 protein. Length = 323 Score = 27.9 bits (59), Expect = 6.4 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 240 RSVWLCCVPDNPINKTSLNHEDNWRT 317 RS+W CC+P N S + WRT Sbjct: 275 RSMWSCCIPTTYYNNYSNALKIAWRT 300 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,946,780 Number of Sequences: 27780 Number of extensions: 291808 Number of successful extensions: 741 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 730 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 741 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1395683256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -