Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H19
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    29   0.77 
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   2.3  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.4  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   7.2  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   7.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   9.5  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   9.5  

>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 228 HTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIE 368
           +  CKL   V +VT   P   V +LN  + + +S  +N  +TN  I+
Sbjct: 63  YDNCKLSICVPIVTTCIPYHSVENLNFNIRQNISTTLNLEKTNDSIK 109


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 442 CS-FRSCLYQPPAMKHPGLPDIMTAASIPEFVSISFTMLLTSSITW 308
           CS F SC ++    KHP  P   +   IP+F+S  F  + +  + +
Sbjct: 5   CSIFLSCSHRVIQAKHPPFPLFHSYFHIPDFLSFVFPFVASPPLAF 50


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 415 PPAMKHPGLPDIMTAASIPEFVSISFTMLLTSSITWVLSEFTLTFGESKVTT 260
           P     P    I++ ++IP   SIS + + T+ I+   ++FT TF +  + T
Sbjct: 122 PTTSSTPTSSSILSNSTIPSSSSISASTITTTIISG-STQFTTTFVDQSIDT 172


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 224 STYKMQIGQWSLRSHFGLSK 283
           S Y + + +WS+ S+FG SK
Sbjct: 38  SIYSIYVDKWSITSYFGNSK 57


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 524 IYGFRDCSILLNISCPLL 471
           IYG++D ++ +   CPL+
Sbjct: 45  IYGYKDLNVTITYECPLM 62


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = +3

Query: 126 NSKILSALKILRSRKELFISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSPNVK-VNSL 302
           NS +   L  L+S     + GV +R+  +  + +     L + V  +T +  +++ +N L
Sbjct: 384 NSTVYQELLNLKSNNSS-VDGVKTRRQLLEENAL-----LSHKVLKLTEEIQDLETLNQL 437

Query: 303 NTQVMEEVSNIVNEIETNSGIEAAVIISGKP 395
           NT++    S  +NE++  +   + ++IS +P
Sbjct: 438 NTEIEARQSEKLNEVQEETQRLSQLLISSQP 468


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +3

Query: 180 ISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNS 359
           +SG+ SR      SQV+  C   +  ++    +P+V++  +NT    ++  +  E  TN+
Sbjct: 28  LSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYDINTS--SQMPLMTFEGHTNN 85

Query: 360 GIEAAVIISGK 392
               A    GK
Sbjct: 86  VTAIAFHCDGK 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,751
Number of Sequences: 5004
Number of extensions: 45314
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)