Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H19
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908     42   4e-04
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561     32   0.46 
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966...    31   0.60 
10_08_0361 + 17207657-17207701,17208850-17209773                       28   5.6  
09_02_0103 - 4324578-4324639,4324848-4324983                           28   7.4  

>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
          Length = 88

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +3

Query: 207 AVPASQVHTKCKLV-NGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVII 383
           A  A++   K ++  NGV V+TLD P   +N++N ++       ++E ETN  ++  ++ 
Sbjct: 2   AAAAAEEFVKGRVTPNGVAVITLDRPKA-LNAMNLEMDLRYKAFLDEWETNPSVKCVLVE 60

Query: 384 SGKPGCFIAGG 416
           S  P  F AGG
Sbjct: 61  SSSPRAFSAGG 71


>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
          Length = 495

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +3

Query: 276 SPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGG*YKHDRKLQNKGR 455
           SP+ +  +L  +V ++  + VNE   N   E A++   KP    +GG YK  +KL+ +G+
Sbjct: 195 SPSKQCIALQAEVEDKGKSKVNEANDNLEEEIALLARSKPSKKKSGG-YKLMKKLKKEGK 253

Query: 456 SCQS 467
             ++
Sbjct: 254 KIEA 257


>05_04_0393 -
           20895485-20895645,20895750-20896358,20896541-20896616,
           20896729-20896920,20897118-20897438,20897880-20898119,
           20898205-20898522,20898621-20898678,20898778-20898936,
           20900090-20900308,20900400-20900614
          Length = 855

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -1

Query: 427 CLYQPPAMKHPGLPDIMTAASIPEFVSISFTMLLTSSITWVLSEF-TLTFGESKV-TT*T 254
           CLY   A ++P        A IP+F   S  +  TSS+ W ++   T+ +G+     T  
Sbjct: 228 CLYYLIADRYPHREKTWIGAVIPDFQEASLWIRYTSSVYWSITTMTTVGYGDMHAQNTVE 287

Query: 253 PLTNLHFVCTWLAGTAY 203
            + N+ ++   L  TAY
Sbjct: 288 MIFNIFYMLFNLGLTAY 304


>10_08_0361 + 17207657-17207701,17208850-17209773
          Length = 322

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
 Frame = +3

Query: 138 LSALK-ILRSRKELFISGVHSR---KYAVPASQVHTKCKL-VNGVYVVTLDSPNV-KVNS 299
           LSA++ I +S++E+F +G+H +   K A      ++   L V     +++  P+V K   
Sbjct: 41  LSAIEGIDKSKQEMFFAGMHLKNEDKLADYNIMTNSSVDLYVTDAIQISVRIPSVGKTTK 100

Query: 300 LNTQVMEEVSNIVNEIETNSGI 365
           LN +    +++I  EIE   GI
Sbjct: 101 LNMRKSNSIADIKAEIEQEEGI 122


>09_02_0103 - 4324578-4324639,4324848-4324983
          Length = 65

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +3

Query: 144 ALKILRSRKELF---ISGVHSRKYAVPASQVHTKCKLVNGVY-VVTLDSP 281
           A+ + RS   L+   I+  HSR  +V +  VH +CKL+N  Y  +TL  P
Sbjct: 14  AVPVARSSPPLYAVNITTSHSR--SVTSRFVHPRCKLINDNYSPITLSQP 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,060,259
Number of Sequences: 37544
Number of extensions: 275917
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)