Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H19
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)                   36   0.038
SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)                   29   3.3  
SB_17070| Best HMM Match : MFS_1 (HMM E-Value=0.083)                   29   4.3  
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 21/63 (33%), Positives = 38/63 (60%)
 Frame = +1

Query: 364 LKLQSLYQASLDASLQGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGS 543
           +K   L  A     + GADI+M++  +   +V  ++K G ++++ +E S KP +AAI G+
Sbjct: 80  VKCSVLMSAKPGCWIAGADINMLKAGENAAQVTEIAKGGQQVYQFLEDSPKPVVAAIMGT 139

Query: 544 CLG 552
           C+G
Sbjct: 140 CMG 142



 Score = 34.3 bits (75), Expect = 0.087
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 291 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAG 413
           +  +  Q +  +  ++ EI  N  ++ +V++S KPGC+IAG
Sbjct: 56  IYGIRQQPLLPLRKVMQEITHNPDVKCSVLMSAKPGCWIAG 96


>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
          Length = 230

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = +2

Query: 578 CKYRIAVKDSXTGFGLPXVMLGLLP 652
           C YRIAV D  T    P VMLGLLP
Sbjct: 25  CHYRIAVNDGKTVLSAPEVMLGLLP 49


>SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 291 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAG 413
           VNS + + +EE+ + + ++E+N+     ++ S  P  F AG
Sbjct: 8   VNSFSLEFLEEIHDTLEDLESNTDCRGLIVTSSMPKVFSAG 48


>SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 261 VVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIIS 386
           V T+      VNS N Q+MEE+  I+ ++E+N      +I S
Sbjct: 60  VATIKLNRKPVNSFNMQLMEEICLILEDLESNKDCRGLIITS 101


>SB_12427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 370 LQSLYQASLDASLQGADISMIENCKTKEEVVSLS-KRGHEIFRRIEQSRKPYIAAIQGSC 546
           L +L +A+ +   +G D  +I+NCK  + V     K G E+ R  +   +     +    
Sbjct: 43  LVALIKAASNLQEEGPDFEVIDNCKESKVVCEFEFKNGAELIRHCDHCNEASATQLVSPG 102

Query: 547 LGRWIXD 567
           L  W  D
Sbjct: 103 LSSWFSD 109


>SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)
          Length = 149

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 484 EIFRRIEQSRKPYIAAIQGSCLGRWI-XDCSC 576
           E F  IE+  KP IAA+  +C+G  +   C+C
Sbjct: 30  ESFTAIEKCEKPVIAAVHSACVGGGVDMICAC 61


>SB_17070| Best HMM Match : MFS_1 (HMM E-Value=0.083)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 269 SDYVNSIDQFAFCMYLACWNGILSAMYTGYE 177
           SD VN++  +  CM L     ++S + TGY+
Sbjct: 163 SDCVNTLVLYQMCMVLTALTSVISILATGYQ 193


>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 406  LQGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLG 552
            + G D+S+++   T  E   +    H+ F R+++     +AAIQG  +G
Sbjct: 935  VSGGDLSVLKEIHTPGEGEQMCYFMHKTFARLQRLPLISLAAIQGLAIG 983


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,763,236
Number of Sequences: 59808
Number of extensions: 343541
Number of successful extensions: 906
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)