Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H19
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family pr...    35   0.054
At4g36420.1 68417.m05174 ribosomal protein L12 family protein          33   0.16 
At5g41180.1 68418.m05005 leucine-rich repeat protein kinase, put...    28   4.7  

>At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family
           protein similar to Delta 3,5-delta2,4-dienoyl-CoA
           isomerase, mitochondrial (ECH1) from Rattus norvegicus
           [SP|Q62651], from Homo sapiens [SP|Q13011]; contains
           Pfam profile PF00378 enoyl-CoA hydratase/isomerase
           family protein
          Length = 278

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 499 IEQSRKPYIAAIQGSCLGRWIXDCSCM*ISHCCE 600
           IEQ RKP IAAI G+C+G  +   +   I +C E
Sbjct: 110 IEQCRKPVIAAIHGACIGGGVDLITACDIRYCSE 143


>At4g36420.1 68417.m05174 ribosomal protein L12 family protein
          Length = 179

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
 Frame = +3

Query: 108 NLKVMAN--SKILSALKILRSRKELFISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSP 281
           NL+++++  S++L + +   S  +LF   + SR Y+ PA+Q     K+VN +  +TL   
Sbjct: 3   NLRIISSHFSRVLKSTETRSSSVQLFT--IQSRSYSSPATQSENVSKIVNELSNLTL--- 57

Query: 282 NVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGG*YKHDRK 437
            ++   L T+++ +  NI +E+   + +   + + G      AGG  K  +K
Sbjct: 58  -LETMDL-TEILRQKLNI-SELPVMAAMMPGMSLPGSGASKSAGGEGKEKKK 106


>At5g41180.1 68418.m05005 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 664

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 451 PLFCSFRSCLYQPPAMKHPGLPDIMTAASIPE 356
           P +C  R CL +    K+ G PD+M +   PE
Sbjct: 553 PSYCQDRGCLVEWVREKNLGAPDVMASLVDPE 584


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,434,935
Number of Sequences: 28952
Number of extensions: 232363
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)