Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H18
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.3  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    27   3.0  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.0  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    26   5.2  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   6.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   9.1  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   9.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 468 YDPPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMM 635
           Y+  GF MYL  ++GFG  +V     + V  F  ++     WW+  +   L+  ++
Sbjct: 7   YEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIPTWLFVLVI 62


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 227 YQYVKQYVLPKRDVTRLYFIIYTNSYQ 307
           ++ +  YV+PKR++      + TN YQ
Sbjct: 57  FETISDYVIPKRELCNKTITVCTNHYQ 83


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 509 WFWQNVGHHVYTQRCEY 559
           W WQN+G   YT+ C++
Sbjct: 75  WNWQNLGISRYTKDCDF 91


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 486 NMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAW 593
           N Y+   +GF     ++ +LSG  I   LN P  AW
Sbjct: 46  NWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAW 81


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 124 NIRSPKNKY-SVVKRNNHCESNDLHP 198
           N  +P NK+ + V RN H ES   HP
Sbjct: 594 NSNTPFNKFPNSVSRNTHFESKSPHP 619


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 495  LSRIIGFGKMLVIMCILSGVNIFAWLNK 578
            +S++  FG  L++  +L G+N + W +K
Sbjct: 1471 MSQLSAFGVKLLLPTLLDGLNEYNWRSK 1498


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -3

Query: 186  VAFAMVIPLYYGI---FIFRRPNVFNFVMNKKQNQIQIYTYWLMKF*KPLFECXFNLIF* 16
            +A  + +PL  G+   FI  R NVF  V  K  N   IY++    F   + E  FNL+F 
Sbjct: 1258 MATVLAVPLINGLQPKFIELR-NVFE-VREKPSN---IYSWVAFVFSAIIVEIPFNLVFG 1312

Query: 15   MTFF 4
              FF
Sbjct: 1313 TLFF 1316


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = +3

Query: 276  CTLL---FTLTHINADSDEGSISKIGSSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPE 446
            C LL    T+  I+A+S  G++ ++ + + +T+    C++ GY    E++  +++   P 
Sbjct: 916  CNLLDPNMTIFRIDANSF-GALEEVEAFIRNTL----CFNFGYMGTDEEFRFLLKDHSPP 970

Query: 447  ISVIGANYDPPGFNMYLSRIIGFGKMLVIMC 539
                    D    N  LS  + F  + +++C
Sbjct: 971  SPKHAIVIDGDALNFVLSEQVSF--LFLMLC 999


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,855
Number of Sequences: 5004
Number of extensions: 59904
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)