Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H18
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.78 
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         29   2.4  
SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_3399| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    27   9.7  

>SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 519 KMLVIMCILSG--VNIFAWLNKPQPAWWSWCLENKLYACMM 635
           K++ I  I+ G  V +F  LN   P  ++W + NK+Y+C++
Sbjct: 3   KLIAIGIIMLGEQVRLFENLNITPPEIYTWAVNNKMYSCIL 43


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 608  KAPTPPSRLWFVQPSKNIHTAEYTHDDQHFAKTNNS*KIHVKTR 477
            + P+P +   F  P  NI  A+ TH+ QH   T  S ++HV+TR
Sbjct: 2550 EGPSPVNTCGFRVPKMNIQGAKATHEVQHL--TLLSVELHVRTR 2591


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 210  LVDKWVKIVAFAMVIP-LYYGIFIFRRPNVFNFVMNKKQNQIQ 85
            LVD       FA +IP L+ GI +F    +   ++NKK+N +Q
Sbjct: 1529 LVDSMKAGWVFAAIIPALFVGILLFMETELTGVLINKKENCLQ 1571


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 476 WVIVSSNDRNLWVFLLYNSCIVFKYLFVATRITVID 369
           W+     +   WVFL++N+C VF +    T +T I+
Sbjct: 151 WMATQIRNNKYWVFLVFNTC-VFAHFDRVTSLTFIN 185


>SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 162 LYYGIFIFRRPNVFNFVMNKKQNQIQI 82
           L+ G FIF+ P VF+ + ++ Q+Q Q+
Sbjct: 78  LWTGFFIFKLPKVFSLLESRLQSQAQV 104


>SB_3399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 103 LVHYKIENIRSPKNKYSVVKRNNHCESNDLHPFIY*IRLEKISVCQTI 246
           L++  +EN     +   V +    C+  D HPF Y +  ++I + + I
Sbjct: 55  LLNPNLENRSMASHSADVSREKPVCQKEDRHPFDYGVEFDRIQILRNI 102


>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 70  PISIDLYLVLFLVHYKIENIRSPKNKYSVVKRN 168
           P S+ L++    +HYKI  + S K+     KRN
Sbjct: 240 PYSMKLFMFFKFLHYKIPEVHSGKSSSVPSKRN 272


>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 429  QQKYPEISVIGANYDPPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNK 578
            ++K PEIS+ G NY    FN+ L + +G  ++  I  +L+   +  WL +
Sbjct: 936  REKPPEISLKGVNY----FNLLLLQTVGDTEVAAI--LLNSKRLMEWLQQ 979


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,629,754
Number of Sequences: 59808
Number of extensions: 409888
Number of successful extensions: 1155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)