Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H18
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47300.1 68416.m05141 selenoprotein-related contains weak sim...    54   6e-08
At5g58640.1 68418.m07348 selenoprotein-related contains weak sim...    53   2e-07
At1g73140.1 68414.m08458 hypothetical protein                          31   0.64 
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ...    30   1.5  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    28   6.0  
At5g36270.1 68418.m04375 dehydroascorbate reductase, putative si...    27   7.9  
At2g32610.1 68415.m03981 cellulose synthase family protein simil...    27   7.9  

>At3g47300.1 68416.m05141 selenoprotein-related contains weak
           similarity to selenoprotein W (Swiss-Prot:P49904)
           [Rattus norvegicus]
          Length = 209

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 27/97 (27%), Positives = 45/97 (46%)
 Frame = +3

Query: 342 GSSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRIIGFGK 521
           G   G+T+ I +C SC YK        +++  +P + V+ ANY  P     L++++   +
Sbjct: 52  GVGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111

Query: 522 MLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACM 632
           + VI  I+ G  IF  +   QP  W   L    +  M
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSM 148


>At5g58640.1 68418.m07348 selenoprotein-related contains weak
           similarity to Selenoprotein W (Swiss-Prot:P49904)
           [Rattus norvegicus]
          Length = 228

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = +3

Query: 333 SKIGSSVGH--TMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRI 506
           S +G ++G+  T+ I +C SC YK        +++  +P + VI ANY PP     L+++
Sbjct: 64  SGLGGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKRLLAKV 123

Query: 507 IGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACM 632
           +   +M VI  I++G  I   +    P  W   L    +  M
Sbjct: 124 VPVVQMGVIGMIVAGDRILPMIGITNPPAWFHSLRANRFGSM 165


>At1g73140.1 68414.m08458 hypothetical protein
          Length = 413

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 497 FTNYWFWQNVGHHVYTQR-CEYFCLVEQTT 583
           F   W W NV + +YT++ C Y  LV+QTT
Sbjct: 60  FEGQWVWDNVSYPLYTEKSCPY--LVKQTT 87


>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 236

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +3

Query: 189 SSPIYLLNSVRKDISMSNNMFYLNAMLLVCTLLFTLTHI-NADSDEGSISKIGSSVGHTM 365
           +SP++++N V +  S+    FYL+    + +  F L  + N+D+   + + IG+ +G   
Sbjct: 152 ASPLFVINLVIRTKSVEFMPFYLSLSTFLMSASFLLYGLFNSDAFVYTPNGIGTILGIVQ 211

Query: 366 NIYYCY 383
              YCY
Sbjct: 212 LALYCY 217


>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 432 QKYPEISV-IGANYDPPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNK 578
           QKY E+S  +G     PGF    S + G  K+LV+       N+F WL +
Sbjct: 246 QKYAELSFYLGLRVYEPGFWGIESGLRG--KVLVVAACTLQYNVFRWLER 293


>At5g36270.1 68418.m04375 dehydroascorbate reductase, putative
           similar to dehydroascorbate reductase {Spinacia
           oleracea} gi:10952511 gb:AF195783, PMID:11148269
          Length = 217

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 420 GIIQQKYPEISVIGANYDPPGFNMYLSRIIG 512
           GII++KYPE S++     PP F    S+IIG
Sbjct: 80  GIIEEKYPEPSLVTF---PPEFASVGSKIIG 107


>At2g32610.1 68415.m03981 cellulose synthase family protein similar
           to Zea mays cellulose synthase-3 [gi:9622878], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 757

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 434 LLYNSCIVFKYLFVATRITVIDIHCM 357
           LL+NS +  K L++   +T++ IHC+
Sbjct: 558 LLHNSTLFPKGLYLGITVTLVGIHCL 583


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,947
Number of Sequences: 28952
Number of extensions: 287292
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)