Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H17
(543 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 151 1e-35
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 138 8e-32
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 124 1e-27
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 118 9e-26
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 108 7e-23
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 107 1e-22
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 97 2e-19
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 91 2e-17
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 87 2e-16
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 80 3e-14
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 77 3e-13
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 77 3e-13
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 74 2e-12
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 72 8e-12
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 69 9e-11
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 65 1e-09
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 60 3e-08
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 58 1e-07
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 51 2e-05
UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic D-r... 36 0.80
UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7; E... 35 1.1
UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisia... 33 4.3
UniRef50_Q8G0I1 Cluster: Putative uncharacterized protein; n=3; ... 33 5.6
UniRef50_A1V9P0 Cluster: ComEC/Rec2-related protein; n=2; Desulf... 32 7.4
UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2; C... 32 7.4
UniRef50_Q6BJC6 Cluster: Similarity; n=1; Debaryomyces hansenii|... 32 7.4
UniRef50_Q18US1 Cluster: Transposase, IS4; n=1; Desulfitobacteri... 32 9.8
UniRef50_A5V7X6 Cluster: TonB-dependent receptor precursor; n=1;... 32 9.8
UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3; Alphapr... 32 9.8
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 151 bits (366), Expect = 1e-35
Identities = 70/78 (89%), Positives = 76/78 (97%)
Frame = +1
Query: 292 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 471
I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYKTK
Sbjct: 74 ILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKR 133
Query: 472 VLPPNWKYESSTASALVA 525
VLPPNWKYESSTASALVA
Sbjct: 134 VLPPNWKYESSTASALVA 151
Score = 146 bits (355), Expect = 2e-34
Identities = 68/73 (93%), Positives = 71/73 (97%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 252 AQVRFVTGKKILR 290
AQVRFVTG KILR
Sbjct: 61 AQVRFVTGNKILR 73
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 138 bits (334), Expect = 8e-32
Identities = 67/92 (72%), Positives = 76/92 (82%)
Frame = +1
Query: 250 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 429
+P+ S + I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVE
Sbjct: 60 IPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVE 119
Query: 430 SRIHRLARYYKTKSVLPPNWKYESSTASALVA 525
SRIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 120 SRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 113 bits (272), Expect = 2e-24
Identities = 53/73 (72%), Positives = 59/73 (80%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
MGRMH+ GKGIS SALPY+RS P+WLK T DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 252 AQVRFVTGKKILR 290
QV+ VTG KILR
Sbjct: 61 PQVKSVTGSKILR 73
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 124 bits (300), Expect = 1e-27
Identities = 56/78 (71%), Positives = 67/78 (85%)
Frame = +1
Query: 292 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 471
I+K GLAP++PEDLY+L+K+A MRKHLER+ D+D+K+RLILVESRIHRLARYYK
Sbjct: 74 ILKHNGLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKYRLILVESRIHRLARYYKRVK 133
Query: 472 VLPPNWKYESSTASALVA 525
LPP WKYESSTASA+VA
Sbjct: 134 QLPPTWKYESSTASAMVA 151
Score = 89.8 bits (213), Expect = 4e-17
Identities = 41/73 (56%), Positives = 55/73 (75%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
M RMH G+G + SALPYRR+ P WLK+ + +V + + K +KG+ PSQIG+ LRDS G+
Sbjct: 1 MVRMHGNGRGKASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGI 60
Query: 252 AQVRFVTGKKILR 290
AQV+ VTG+KILR
Sbjct: 61 AQVKNVTGRKILR 73
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 118 bits (284), Expect = 9e-26
Identities = 57/73 (78%), Positives = 64/73 (87%)
Frame = +1
Query: 307 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 486
GLA DLP DLY+LIKKAVA++KHLERNRKDKD+KF L L ESRIH LARY KTK +LPP+
Sbjct: 59 GLALDLPGDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTESRIHPLARYCKTKRMLPPS 118
Query: 487 WKYESSTASALVA 525
WKYES +ASALVA
Sbjct: 119 WKYESPSASALVA 131
Score = 98.7 bits (235), Expect = 8e-20
Identities = 45/61 (73%), Positives = 50/61 (81%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
MG MHAP K +SQS LPY SV WLK T+DD+KEQIYKL KKGLTPSQIGV LRD+HG+
Sbjct: 1 MGAMHAPRKALSQSVLPYHHSVLMWLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTHGL 60
Query: 252 A 254
A
Sbjct: 61 A 61
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 108 bits (260), Expect = 7e-23
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +1
Query: 310 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 489
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKFRLI+VESRIHRLARYYK LPP W
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFRLIVVESRIHRLARYYKRTKKLPPVW 128
Query: 490 K 492
K
Sbjct: 129 K 129
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 107 bits (258), Expect = 1e-22
Identities = 46/71 (64%), Positives = 61/71 (85%)
Frame = +1
Query: 292 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 471
I+K GL P++PEDL++LIKKA+ ++KHLERN+KDKDSKFRLIL ES+IHRL+RYYK
Sbjct: 71 ILKKNGLNPEIPEDLFFLIKKAINIKKHLERNKKDKDSKFRLILTESKIHRLSRYYKRIQ 130
Query: 472 VLPPNWKYESS 504
+P NW+++SS
Sbjct: 131 RIPINWRFDSS 141
Score = 66.5 bits (155), Expect = 4e-10
Identities = 29/65 (44%), Positives = 43/65 (66%)
Frame = +3
Query: 96 KGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 275
KGI+ S +P+ R+ P W+K + + + E I L KKGL PSQIG LRDS G+ V+ + G
Sbjct: 6 KGIASSLIPFERNAPLWVKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAG 65
Query: 276 KKILR 290
+ I++
Sbjct: 66 RNIVK 70
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 97.1 bits (231), Expect = 2e-19
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 63 AANMGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 239
AA GR+H PGKG+S+SAL Y SVPTWLKLT+D+VKEQIYKL KKGLTP QIGV+LRD
Sbjct: 211 AAITGRIHVPGKGLSRSALLYHHSVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 91.1 bits (216), Expect = 2e-17
Identities = 44/82 (53%), Positives = 58/82 (70%)
Frame = +1
Query: 277 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 456
K+ S IMK GL P +PEDL L+++AV +RKHLE++ KD SK L L+ES+I RL +Y
Sbjct: 69 KKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKY 128
Query: 457 YKTKSVLPPNWKYESSTASALV 522
YK+K VLP +W+Y TA LV
Sbjct: 129 YKSKGVLPADWRYTPETARLLV 150
Score = 74.5 bits (175), Expect = 1e-12
Identities = 32/71 (45%), Positives = 49/71 (69%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
M RMHA +G S S P R+ VP W++ T + V++ + +L KKG +QIG++LRD++G+
Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGI 60
Query: 252 AQVRFVTGKKI 284
V+ +TGKKI
Sbjct: 61 PDVKLITGKKI 71
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 87.0 bits (206), Expect = 2e-16
Identities = 40/77 (51%), Positives = 55/77 (71%)
Frame = +1
Query: 292 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 471
I++ GLAP++PEDL +LIK+AV +RKHLE++ KD S L L+ES+I RL +YYK K
Sbjct: 81 ILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKG 140
Query: 472 VLPPNWKYESSTASALV 522
LP +W+Y+ A LV
Sbjct: 141 KLPKDWRYDPEQAKLLV 157
Score = 58.8 bits (136), Expect = 7e-08
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
M RMHA +G S S P R + P WL+ T +D++ + KL K+G + + IG +LRD +G+
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 252 AQVR 263
V+
Sbjct: 61 PTVK 64
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 80.2 bits (189), Expect = 3e-14
Identities = 36/80 (45%), Positives = 50/80 (62%)
Frame = +1
Query: 271 LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 450
+ K ++ GL PD+P DL YL+K+A + KH+E N +D +K L+ S+IHRLA
Sbjct: 69 IGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLA 128
Query: 451 RYYKTKSVLPPNWKYESSTA 510
+YYK K VLP +WKY A
Sbjct: 129 KYYKRKGVLPKDWKYSIEIA 148
Score = 55.2 bits (127), Expect = 9e-07
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +3
Query: 72 MGRMHAPGK--GISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 245
M R+HA + G S S P R + P W + V+ +I +L K+G +P+ IG++LRD +
Sbjct: 1 MSRLHAHKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQY 60
Query: 246 GVAQVRFVTGKKILRYHE 299
G+ VR GK + + E
Sbjct: 61 GIPDVRLYIGKSLQDFLE 78
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 76.6 bits (180), Expect = 3e-13
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +1
Query: 286 SXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKT 465
S I++ GL P +PEDL+YLIKKA ++ HL + D +++ L L+ES I+RL+RYYK
Sbjct: 73 SKILRLKGLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANRYHLNLIESHIYRLSRYYKR 132
Query: 466 KSVLPPNWKYESS 504
LP NWKY S+
Sbjct: 133 IFRLPKNWKYISN 145
Score = 56.4 bits (130), Expect = 4e-07
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGK-KGLTPSQIGVMLRDSHG 248
MG+M++ GKGIS + +PYR+ W LT+ ++ + I L K L PS+IG++LRD
Sbjct: 1 MGKMYSKGKGISSTTVPYRKYSCEWKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDEKL 60
Query: 249 VAQVRFVTGKKI 284
V R ++G I
Sbjct: 61 VVDTRNISGMNI 72
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 76.6 bits (180), Expect = 3e-13
Identities = 37/73 (50%), Positives = 50/73 (68%)
Frame = +1
Query: 277 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 456
K+ I+K G+ PEDL LIKKA+ +R HLE +RKDK ++ L L+E++I RL+ Y
Sbjct: 69 KKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSY 128
Query: 457 YKTKSVLPPNWKY 495
YK K VLP +WKY
Sbjct: 129 YKEKGVLPADWKY 141
Score = 66.1 bits (154), Expect = 5e-10
Identities = 30/71 (42%), Positives = 48/71 (67%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
M R+HA +G S S YR S P W+ ++ ++V++++ +L +G PS IG++LRD +G+
Sbjct: 1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGI 60
Query: 252 AQVRFVTGKKI 284
V+ VTGKKI
Sbjct: 61 PSVKQVTGKKI 71
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 74.1 bits (174), Expect = 2e-12
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = +1
Query: 271 LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 450
L + + ++ G+ P +P DL L+ +A +R HL RKD +K+RLILV SR++R+A
Sbjct: 67 LGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVA 126
Query: 451 RYYKTKSVLPPNWK 492
RYYK K +P NWK
Sbjct: 127 RYYKRKMRIPGNWK 140
Score = 70.1 bits (164), Expect = 3e-11
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
M +MH+ GKG S S PY + PTWL + D++K + ++G KG+ IG LRD +G+
Sbjct: 1 MAKMHSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGI 60
Query: 252 AQVRFVTGKKILRY 293
+ V G+ I R+
Sbjct: 61 GKASDVLGESITRF 74
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 72.1 bits (169), Expect = 8e-12
Identities = 32/78 (41%), Positives = 51/78 (65%)
Frame = +1
Query: 277 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 456
K + IM+ G P+LPEDL +++KAV +++HL N+ D+ + L L+E+++HRL Y
Sbjct: 68 KSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVY 127
Query: 457 YKTKSVLPPNWKYESSTA 510
YK +P +WKY+S A
Sbjct: 128 YKRIGRIPKDWKYKSVVA 145
Score = 60.5 bits (140), Expect = 2e-08
Identities = 30/76 (39%), Positives = 43/76 (56%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
MGR+H+ G S S P P+W++ +V++ I K K+GL PSQIG LRD H +
Sbjct: 1 MGRLHSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAI 59
Query: 252 AQVRFVTGKKILRYHE 299
R +TGK + + E
Sbjct: 60 PLTRPITGKSVTQIME 75
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 68.5 bits (160), Expect = 9e-11
Identities = 30/78 (38%), Positives = 50/78 (64%)
Frame = +1
Query: 277 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 456
K I++ L ++PEDL ++KKAV +++HL+ N+ D+ + L L+E+++HRL+ Y
Sbjct: 69 KTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVY 128
Query: 457 YKTKSVLPPNWKYESSTA 510
YK +P WKY+S A
Sbjct: 129 YKKIGRIPATWKYKSVVA 146
Score = 64.1 bits (149), Expect = 2e-09
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
MGRMH G S S P P+W+ + +++E + K K GLTPSQIG+ LRD H +
Sbjct: 1 MGRMHTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSI 60
Query: 252 AQVRFVTGKKI 284
++ +T K I
Sbjct: 61 PLIKPITKKTI 71
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 64.9 bits (151), Expect = 1e-09
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +3
Query: 63 AANMGRMHAPGKGISQSALPYRRSVPTWLKLTADDVK 173
+A +GRMHAPGKG+SQSALPYRRSV WLKL +DDVK
Sbjct: 441 SAIVGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 60.1 bits (139), Expect = 3e-08
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
M RM+A +G S S+ P+ P W A +++ I + K G++ +QIG +LRD H V
Sbjct: 1 MARMYASKRGKSGSSKPFMTEAPEWSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAV 60
Query: 252 AQVRFVTGKKI 284
VR V GK+I
Sbjct: 61 PNVRLVLGKRI 71
Score = 58.4 bits (135), Expect = 1e-07
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +1
Query: 271 LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 450
L KR ++ + PEDL L+++AVA+ +HL N +D +K L L E++I RL
Sbjct: 67 LGKRIGAVLSENDESGTYPEDLMNLMRQAVAIIEHLTTNSRDLHNKRSLELTEAKIRRLG 126
Query: 451 RYYKTKSVLPPNWKYESSTASALV 522
YYK + L +W+Y+ +V
Sbjct: 127 NYYKAEGRLDSDWRYKRDQLRLIV 150
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 58.0 bits (134), Expect = 1e-07
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +1
Query: 292 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 471
++K L D+PEDL LI++ KHL N+ D ++K + L+ S++ RL RYYK S
Sbjct: 74 VLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTS 133
Query: 472 VLPPNWKYE 498
LP +W E
Sbjct: 134 RLPQDWSLE 142
Score = 56.0 bits (129), Expect = 5e-07
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
M RMH +G S S R P+W++ + D++KE I K+ K+G+T S IG+ LRD + +
Sbjct: 1 MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAI 60
Query: 252 AQVRFVTGKKI 284
R V K+
Sbjct: 61 PGTRPVLHMKL 71
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 51.2 bits (117), Expect = 2e-05
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +1
Query: 277 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 456
K+ + I++ PDLPEDL L+++AV +R H++ N D +K L +S+I RL Y
Sbjct: 73 KKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDY 132
Query: 457 YKTKSVLPPNWKYESSTA 510
Y+ V N+ Y A
Sbjct: 133 YRGDEV-DENFTYSYDNA 149
Score = 48.4 bits (110), Expect = 1e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDS--H 245
M RMH +G S S P P W + D ++ ++ +L ++G +PS+IG+ LRD
Sbjct: 1 MARMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQ 60
Query: 246 G--VAQVRFVTGKKI 284
G + V TGKK+
Sbjct: 61 GTPIPDVSLATGKKV 75
>UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic
D-ribose-binding protein; n=4; Rhizobiales|Rep: Ribose
ABC transporter, periplasmic D-ribose-binding protein -
Brucella suis
Length = 355
Score = 35.5 bits (78), Expect = 0.80
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 132 SVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 263
+VPTW+K T D + +++ +L K+GL +M+ D+ G AQ +
Sbjct: 57 AVPTWMKQTEDTIVDEVAQLKKEGLVKD---LMITDAQGNAQTQ 97
>UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7;
Eurotiomycetidae|Rep: Ribosomal protein S15, putative -
Aspergillus clavatus
Length = 306
Score = 35.1 bits (77), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 343 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 495
L K + + +HL+ KDK +K L L+ + +L RY + K P W++
Sbjct: 238 LTAKIINLSRHLQSTNKDKHNKRNLRLLVHKRQKLLRYLRKKERGGPRWQH 288
>UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisiae
MRPS28: YDR337w. precursor; n=1; Aspergillus niger|Rep:
Remark: alternate name for S. cerevisiae MRPS28:
YDR337w. precursor - Aspergillus niger
Length = 280
Score = 33.1 bits (72), Expect = 4.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 343 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 492
L K + + +HL+ +KD+ +K L L+ + +L RY + K P W+
Sbjct: 212 LTAKIMNLSRHLQTTKKDRHNKRNLRLLVHKRQKLLRYLRRKERGGPRWQ 261
>UniRef50_Q8G0I1 Cluster: Putative uncharacterized protein; n=3;
Brucella|Rep: Putative uncharacterized protein -
Brucella suis
Length = 276
Score = 32.7 bits (71), Expect = 5.6
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +3
Query: 135 VPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQV 260
+PTWL L ++ Y+L K +TP+ IG+ + + G++++
Sbjct: 149 LPTWLGLRRGKLRPLYYRLIHKEVTPASIGITVFGNDGISRL 190
>UniRef50_A1V9P0 Cluster: ComEC/Rec2-related protein; n=2;
Desulfovibrio vulgaris subsp. vulgaris|Rep:
ComEC/Rec2-related protein - Desulfovibrio vulgaris
subsp. vulgaris (strain DP4)
Length = 979
Score = 32.3 bits (70), Expect = 7.4
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 84 HAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
+A G G++ +ALP S P W+ A V + + GL ++ +MLRD H V
Sbjct: 60 YAAGWGVALAALPETPSAPAWVTGKAQRVTGIVDDV--DGLPDGRLRIMLRDVHPV 113
>UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2;
Cryptosporidium|Rep: 3CCCH domain containing protein -
Cryptosporidium parvum Iowa II
Length = 591
Score = 32.3 bits (70), Expect = 7.4
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 141 TWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 290
T L++T D K + + K G+ GV+ R +HG A++R T K +LR
Sbjct: 154 TELRVTNDFYKTSVCRYWKMGVK-CDAGVLCRHAHGEAELRKKTNKHLLR 202
>UniRef50_Q6BJC6 Cluster: Similarity; n=1; Debaryomyces
hansenii|Rep: Similarity - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 401
Score = 32.3 bits (70), Expect = 7.4
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +2
Query: 65 RKHGSYARSW*GYLPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFT 244
+K Y+ S L +GA L P EI C C N W++G CNA G
Sbjct: 311 KKQTLYSGSSTSPLDLGA-LNPDLSVRQEIRCNHCGSKNTPEWRKGLDGNRTLCNACGLF 369
Query: 245 WSCPSKIRN 271
+S +K N
Sbjct: 370 YSKLTKKYN 378
>UniRef50_Q18US1 Cluster: Transposase, IS4; n=1; Desulfitobacterium
hafniense DCB-2|Rep: Transposase, IS4 -
Desulfitobacterium hafniense (strain DCB-2)
Length = 596
Score = 31.9 bits (69), Expect = 9.8
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = +3
Query: 81 MHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGK------KGLTPSQ-IGVMLRD 239
M G ++ S P S L+ T +VK Y+LG+ KGL S+ I ++ +
Sbjct: 235 MDLNGLPVNMSIFPGNTSDSLTLQPTMKEVKAS-YELGRLVVVADKGLNSSKNIDAIVNN 293
Query: 240 SHGVAQVRFVTGKKILRYHE 299
S G + V GKK RYHE
Sbjct: 294 SDGFVFSQIVKGKKGQRYHE 313
>UniRef50_A5V7X6 Cluster: TonB-dependent receptor precursor; n=1;
Sphingomonas wittichii RW1|Rep: TonB-dependent receptor
precursor - Sphingomonas wittichii RW1
Length = 818
Score = 31.9 bits (69), Expect = 9.8
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 93 GKGISQS-ALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 263
G+G++ + YR + PTW + K I+ L GL + RD++G+ +R
Sbjct: 708 GEGLNLTFRADYRITGPTWFSTVQNQTKRSIFDLFFPGLGTGEYAKSRRDAYGILDLR 765
>UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3;
Alphaproteobacteria|Rep: 3-dehydroquinate synthase -
Parvularcula bermudensis HTCC2503
Length = 371
Score = 31.9 bits (69), Expect = 9.8
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 274 AKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 432
AKR ++ GL P P+D+ LI A R +++++K + + RL+L+E+
Sbjct: 290 AKRVERMIADSGL-PTRPQDIPGLITSAAEQRAFMQQDKKVEAGQLRLVLLEA 341
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,951,931
Number of Sequences: 1657284
Number of extensions: 9536797
Number of successful extensions: 24682
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 24004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24677
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -