Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H17
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 122 1e-28
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 122 1e-28
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 109 2e-24
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 107 6e-24
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 30 1.4
08_01_0010 + 80052-81419 28 5.5
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 7.3
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 9.7
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 122 bits (295), Expect = 1e-28
Identities = 56/67 (83%), Positives = 61/67 (91%)
Frame = +1
Query: 292 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 471
I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK
Sbjct: 113 ILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTK 172
Query: 472 VLPPNWK 492
LPP WK
Sbjct: 173 KLPPTWK 179
Score = 73.3 bits (172), Expect = 1e-13
Identities = 42/82 (51%), Positives = 49/82 (59%), Gaps = 17/82 (20%)
Frame = +3
Query: 96 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIG 224
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 225 VMLRDSHGVAQVRFVTGKKILR 290
V+LRD HG+ V+ VTG KILR
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILR 112
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 122 bits (295), Expect = 1e-28
Identities = 56/67 (83%), Positives = 61/67 (91%)
Frame = +1
Query: 292 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 471
I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK
Sbjct: 74 ILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTK 133
Query: 472 VLPPNWK 492
LPP WK
Sbjct: 134 KLPPTWK 140
Score = 101 bits (242), Expect = 4e-22
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 252 AQVRFVTGKKILR 290
V+ VTG KILR
Sbjct: 61 PLVKSVTGSKILR 73
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 109 bits (261), Expect = 2e-24
Identities = 48/67 (71%), Positives = 59/67 (88%)
Frame = +1
Query: 292 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 471
++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVESR+HRL RYY+
Sbjct: 74 VLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYYRLAK 133
Query: 472 VLPPNWK 492
+P +K
Sbjct: 134 KIPAFFK 140
Score = 93.1 bits (221), Expect = 1e-19
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = +3
Query: 72 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 251
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 252 AQVRFVTGKKILR 290
+ VTG KILR
Sbjct: 61 PLAQGVTGGKILR 73
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 107 bits (257), Expect = 6e-24
Identities = 51/64 (79%), Positives = 55/64 (85%)
Frame = +1
Query: 292 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 471
I+KA GLAP + EDLY+LIKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK
Sbjct: 131 ILKAHGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTK 190
Query: 472 VLPP 483
LPP
Sbjct: 191 KLPP 194
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 165 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKIL 287
+V+E I K K G SQIGV+LR HG+ V+ + KIL
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKIL 129
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 108 GRYPYQERAYDPCLRLFT 55
GRYP+ RAYDPC ++
Sbjct: 295 GRYPWLSRAYDPCTERYS 312
>08_01_0010 + 80052-81419
Length = 455
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 173 LYIVGSQFQPGRDTAAVRQRRLGDTLTRSVH 81
+++VG F R AAVR+ R G + R VH
Sbjct: 236 VFVVGVAFAVARHPAAVRELRAGPSRMRVVH 266
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 126 RRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 239
RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 319 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 417
DLPE L++ AVA R LE++R D+ FR+
Sbjct: 24 DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,056
Number of Sequences: 37544
Number of extensions: 272191
Number of successful extensions: 726
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -