Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H09
(522 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 170 1e-41
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 146 4e-34
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 141 8e-33
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 126 2e-28
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 118 6e-26
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 111 9e-24
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 105 8e-22
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 89 8e-17
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 88 1e-16
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 87 2e-16
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 87 2e-16
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 86 4e-16
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 84 2e-15
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 81 2e-14
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 71 1e-11
UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2; Caenorh... 64 1e-09
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 42 3e-09
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 60 2e-08
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 54 2e-06
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 48 2e-04
UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2; Dictyos... 47 3e-04
UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150, w... 46 5e-04
UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9; Trypano... 45 0.001
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 42 0.011
UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subuni... 38 0.11
UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=... 38 0.18
UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.74
UniRef50_UPI00006CFBC8 Cluster: hypothetical protein TTHERM_0048... 34 1.7
UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 - M... 34 1.7
UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing pr... 34 1.7
UniRef50_Q6FUT9 Cluster: Candida glabrata strain CBS138 chromoso... 34 1.7
UniRef50_Q7TPL8 Cluster: RIKEN cDNA A430033K04 gene; n=12; Murin... 33 5.2
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:... 33 5.2
UniRef50_A7UG40 Cluster: Membrane protein; n=1; Fibrobacter succ... 32 6.9
UniRef50_A7NWC3 Cluster: Chromosome chr5 scaffold_2, whole genom... 32 6.9
UniRef50_UPI00006CB1D5 Cluster: hypothetical protein TTHERM_0030... 32 9.2
UniRef50_Q4T6N5 Cluster: Chromosome 9 SCAF8684, whole genome sho... 32 9.2
UniRef50_Q54RR9 Cluster: Protein kinase, TKL group; n=1; Dictyos... 32 9.2
UniRef50_Q22SL8 Cluster: Leucine Rich Repeat family protein; n=1... 32 9.2
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 170 bits (414), Expect = 1e-41
Identities = 78/124 (62%), Positives = 99/124 (79%)
Frame = +1
Query: 73 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 252
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 253 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILR 432
FT V KK K ++PAKN +R FKAG RRSL K+K LL + YR DL +A LRRASA+LR
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 123
Query: 433 SQRP 444
SQ+P
Sbjct: 124 SQKP 127
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 146 bits (353), Expect = 4e-34
Identities = 68/127 (53%), Positives = 91/127 (71%)
Frame = +1
Query: 64 VKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPD 243
+ SS LNW+I+R++NAFL+K+R+I+KPFS EP N+TNL SFRY+GL+H K + + +
Sbjct: 1 IMASSHLNWLIVRDHNAFLLKRRDIRKPFSTEPGNLTNLSSFRYSGLVHHKTI-TITPAE 59
Query: 244 RKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 423
+KG VY + K KPAK ++ K G RR+L K+ ++KAN YR DL A LRRASA
Sbjct: 60 KKGVNFVYNRKKVLNKPAKAPVKVTLKEGPRRTLKKIANMMKANRYRADLRGAALRRASA 119
Query: 424 ILRSQRP 444
ILRSQRP
Sbjct: 120 ILRSQRP 126
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 141 bits (342), Expect = 8e-33
Identities = 70/124 (56%), Positives = 84/124 (67%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
MS+ L WMI RNNNA+L+KKR+IKKPFS EP N+ N+ SFRYNGL+ K V V D K
Sbjct: 1 MSADLYWMITRNNNAYLLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGK 60
Query: 250 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 429
GF V K+AK KP K+ I AG RRSLYK++R L YR DL + LR+ASAIL
Sbjct: 61 GFVVTTKRAKQQNKPGKSNISVTMSAGPRRSLYKLRRYLDGGKYRKDLTQVALRKASAIL 120
Query: 430 RSQR 441
SQ+
Sbjct: 121 ESQK 124
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 126 bits (305), Expect = 2e-28
Identities = 60/126 (47%), Positives = 84/126 (66%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 250 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 429
G VV K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 430 RSQRPI 447
RSQ+P+
Sbjct: 119 RSQKPV 124
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 118 bits (285), Expect = 6e-26
Identities = 59/125 (47%), Positives = 80/125 (64%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
MSS L W IIRNN+ FLV+ + K +KEPNNVT L++F+YNGL++KK VGV P K
Sbjct: 1 MSSDLQWSIIRNNSCFLVRSQG--KTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGK 58
Query: 250 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 429
G + +K KA KP K + + +RR+L ++ + N+YR DL +RRA AIL
Sbjct: 59 GVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRACAIL 118
Query: 430 RSQRP 444
RSQ+P
Sbjct: 119 RSQKP 123
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 111 bits (267), Expect = 9e-24
Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 3/128 (2%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKP---FSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 240
MS+ L W +I+N+++FL++++ + F+ EPNNV N +SF++NGL++KK VGV
Sbjct: 1 MSAELQWELIKNSSSFLLRRKGPRGSGVTFTTEPNNVMNKNSFKFNGLVNKKVVGVSSAA 60
Query: 241 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRAS 420
D KG K++K KPAK +R RR+ +K+ L+ YR DL + +RRAS
Sbjct: 61 DNKGVLFKTKRSKVVSKPAKMFVRATLSKDRRRAFKSIKKNLECTEYRPDLAELAVRRAS 120
Query: 421 AILRSQRP 444
AIL SQRP
Sbjct: 121 AILSSQRP 128
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 105 bits (251), Expect = 8e-22
Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 1/127 (0%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
+S + WM++RN ++FLVKKRNIKK FS +P N +++ R+ G I K+A+ V + K
Sbjct: 2 VSRTYRWMVVRNCSSFLVKKRNIKKWFSTDPLNPKGVYANRFAGTIKKRALTVEPHSSGK 61
Query: 250 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKA-NHYRTDLCKATLRRASAI 426
G T VY K KPAK L R G RR++ ++ +K +YR DL + RRASAI
Sbjct: 62 GVTFVYLAHKGATKPAKRLKRVQLVKGPRRTMVSIRNWIKGMGYYRRDLRRVCQRRASAI 121
Query: 427 LRSQRPI 447
L+SQR I
Sbjct: 122 LKSQRAI 128
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 88.6 bits (210), Expect = 8e-17
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 246
+SS L W + RN NAFLVK+ + FS++P N+ N HSF+Y G + KA+G V+ +
Sbjct: 8 VSSDLVWQLTRNQNAFLVKRNSGGGSQFSRDPLNLQNKHSFKYAGYANTKAIG-VQPTEN 66
Query: 247 KGFTVVYKKAKATRKPAKNLIRRPF--KAGARRSLYKVKRLLKANHYRTDLCKATLRRAS 420
G V+ KK+ ++P KN +R F KA R+ V N YR DL + + R S
Sbjct: 67 GGVVVLTKKSGNAQQPGKNAVRVTFGPKASTRKIYKGVADKTAKNGYRADLREDAVARVS 126
Query: 421 AILRSQRP 444
AI RSQ+P
Sbjct: 127 AIRRSQKP 134
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 87.8 bits (208), Expect = 1e-16
Identities = 55/128 (42%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 246
+SS L W I RN NAFLVK+R FS++P N+ N SF+Y G + KAVG V+ +
Sbjct: 8 VSSDLVWQITRNQNAFLVKRRTGGGSQFSRDPLNLQNKQSFKYAGYANTKAVG-VQATEN 66
Query: 247 KGFTVVYKKAKATRKPAKNLIRRPF-KAGARRSLYK-VKRLLKANHYRTDLCKATLRRAS 420
G V+ KK ++PAKNL+ + A R +YK V N YR DL + + R S
Sbjct: 67 GGVVVITKKPGNPQQPAKNLVSVSWGPNAATRKIYKAVASKTAKNGYRADLREDAVARVS 126
Query: 421 AILRSQRP 444
AI RSQ+P
Sbjct: 127 AIRRSQKP 134
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 87.4 bits (207), Expect = 2e-16
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Frame = +1
Query: 94 IIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKK 273
+IRNN+AFL ++R I+K FS+EP N+ ++S YNGL + KAVGV D K V KK
Sbjct: 2 VIRNNSAFLRRQRGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKK 61
Query: 274 AKATRKPAKNLIRRPFKAGARRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQR 441
PA+++I+ K G R + K V+ L+K + R K RRAS +LRS R
Sbjct: 62 TGKKNLPAQSVIKTTIKRGGARGIVKSVQGLVKGRNAR--FAKLAARRASQLLRSVR 116
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 87.4 bits (207), Expect = 2e-16
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +1
Query: 73 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 252
S L W+++RNN++F+VK++ I + FS+EP N+ LHS++Y+GL++ KAVG+ KG
Sbjct: 3 SQDLQWLLVRNNSSFIVKQKGIGRIFSREPRNLVQLHSYKYSGLVNAKAVGIEAAKSGKG 62
Query: 253 FTVVYKKAKATRKPAKNLIRRPF--KAGARRSLYKVKRLLKANHYRTDLCKATLR 411
+ K AK + K + K G RR+ V ++ YR DL + R
Sbjct: 63 VVITTKNAKQSSSAIKKTVNVATLKKGGGRRTAGAVSNVVAKKGYRADLTREPTR 117
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 86.2 bits (204), Expect = 4e-16
Identities = 45/108 (41%), Positives = 63/108 (58%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
MSS L W +I+NN+ FL+K+ + FS++P N+ N + FRY G +HKKA+G+ E K
Sbjct: 1 MSSHLIWDLIKNNHCFLMKRG--PECFSRDPLNLKNKNCFRYCGPVHKKAIGIKEERYGK 58
Query: 250 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 393
G V K KPAK + R F G RR+L K++ L YR +L
Sbjct: 59 GVVVTTKNVAKDHKPAKAVTRTKFVRGRRRTLQKIRNLTCKQKYRREL 106
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 83.8 bits (198), Expect = 2e-15
Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Frame = +1
Query: 64 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 240
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 241 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDLCKATLRR 414
R + K +KPAK L R+ A A R YK + + YR DL K ++ R
Sbjct: 61 PRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVAR 119
Query: 415 ASAILRSQRP 444
ASAIL SQRP
Sbjct: 120 ASAILSSQRP 129
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 81.0 bits (191), Expect = 2e-14
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Frame = +1
Query: 82 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 252
L W I++NNN FLVK + N K FSKE NN+TN+HS++++GL +KK V + +
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67
Query: 253 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILR 432
+ K K KP ++ + K R V + N+YR DL KA L R SAI +
Sbjct: 68 VVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISK 127
Query: 433 SQR 441
R
Sbjct: 128 GLR 130
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 71.3 bits (167), Expect = 1e-11
Identities = 42/118 (35%), Positives = 67/118 (56%)
Frame = +1
Query: 73 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 252
S +L W++ +N ++FLVK+ F++E N+ N + +Y+GL KAV + + D+K
Sbjct: 3 SDTLTWLLTKNTSSFLVKRNG--NEFAREKFNLLNRNCRKYSGLASTKAVDISIS-DKK- 58
Query: 253 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 426
T+ K KAT+KPAK P + GAR ++ + N+YR DL KA L + S +
Sbjct: 59 VTLTTKIEKATKKPAKAQNAVPLRKGARGGANTIRANISRNYYRRDLKKAALAKWSRL 116
>UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L28 -
Caenorhabditis elegans
Length = 126
Score = 64.5 bits (150), Expect = 1e-09
Identities = 47/123 (38%), Positives = 67/123 (54%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
MS +L W +IRNN+AFL +R I K FS E N+ ++S +Y+GL +K A+ V + K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58
Query: 250 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 429
G V K K +PAK + ++ + V+RL K N K RRA+AI+
Sbjct: 59 GVVVSTKNEKG--RPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112
Query: 430 RSQ 438
RSQ
Sbjct: 113 RSQ 115
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 41.9 bits (94), Expect(2) = 3e-09
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 202 LIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKAN 375
L +A+GV + + G + KK +++PAK+L + GA R +YK V N
Sbjct: 88 LTSNQAIGV-QATENGGVVTITKKPGTSQQPAKSLAVVTYGPGASNRKIYKGVADRTAKN 146
Query: 376 HYRTDLCKATLRRASAILRSQR 441
YR DL + + R SAI RSQ+
Sbjct: 147 GYRADLRQEAVSRVSAIRRSQK 168
Score = 41.5 bits (93), Expect(2) = 3e-09
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKR-NIKKPFSKEPNNVTNLHSFR 192
+SS L W + RN NA+LVK+ + FS++P NV N HSF+
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFK 49
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 60.5 bits (140), Expect = 2e-08
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
MSS L W+++RN N+F VK + FS+E N+ N + +Y+GL + K V + +P
Sbjct: 1 MSSDLTWLLVRNWNSFQVKGGH-GPVFSREKGNLLNKSAHKYSGLANSKVVSI--HPSAA 57
Query: 250 GFTVVYKKAKATRKP-----AKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRR 414
G + K KA KP A++ + G RR+ YR DL + R
Sbjct: 58 G-GITITKIKADAKPNQVASARSHVTLKRSTGPRRANKIAAAETAGKGYRADLRAVAVAR 116
Query: 415 ASAILRSQR 441
SA+LR++R
Sbjct: 117 TSALLRAER 125
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 54.0 bits (124), Expect = 2e-06
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
+S+ W ++ NA+LVK++ I S++P + NL + +GL H KAVGV
Sbjct: 48 VSNDFIWECTKSTNAYLVKRKGIDTTLSRDPYALNNLSTHYESGLSHDKAVGVHYCKPSG 107
Query: 250 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLK-ANHYRTDLCKATLRRASAI 426
V+ K K KPAK+ FK + S K + K Y+ + + RASAI
Sbjct: 108 KICVITKVVKNANKPAKSRHIVEFKP-TKSSRAIAKAVSKTVQGYKDEQIYDAIVRASAI 166
Query: 427 LRS 435
R+
Sbjct: 167 KRA 169
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 47.6 bits (108), Expect = 2e-04
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 73 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 252
S+ L W ++ N +F+ K+N F+ EP N+ NL++ +Y+GL ++++ + P+ G
Sbjct: 3 STELLWQCVKKNTSFI--KKNNGFTFTSEPFNIMNLNTLKYSGLAARRSISMDLVPNSNG 60
Query: 253 FTVVYKKAKATRK-PAKNLIRRPFK 324
V K AK T+K + IR P K
Sbjct: 61 KLV--KNAKITKKNTGSSTIRCPKK 83
>UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2;
Dictyostelium discoideum|Rep: 60S ribosomal protein L28
- Dictyostelium discoideum (Slime mold)
Length = 132
Score = 46.8 bits (106), Expect = 3e-04
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
MS L W II+ NNAFL + S EP N+ N +S +Y+GL + + V
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGL--TLSAEPGNLRNKNSLKYSGLARRTTIDVAA---VN 55
Query: 250 GFTVVYKK-AKATRKPAKNLIRRPFK-AGARRSLYKVKRLLKANHYRTDLCKATLRRASA 423
G VV K K PA++ F R++ VK L A Y +L A L R
Sbjct: 56 GKVVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTL--ATQYAPELRAAALGRLHR 113
Query: 424 ILRSQR 441
+ + R
Sbjct: 114 VQSALR 119
>UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_150,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 147
Score = 46.0 bits (104), Expect = 5e-04
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVV 231
MS + W +++ NNAFLVK+ + S +P N T + ++ G I K AVGVV
Sbjct: 1 MSQQVLWEVVKGNNAFLVKRNGL--TLSTDPFNNTGVQTYSSTGFISKNAVGVV 52
>UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9;
Trypanosomatidae|Rep: 60S ribosomal protein L28 -
Trypanosoma cruzi
Length = 146
Score = 45.2 bits (102), Expect = 0.001
Identities = 36/115 (31%), Positives = 52/115 (45%)
Frame = +1
Query: 73 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 252
S+ L W+++R N+ FL K+ I+ S +P N + R+ G ++ KA V DR
Sbjct: 4 STDLQWLLVRQNSKFLQKRNGIR--LSSDPFNNNANWTKRHAGFLNTKAAVVKTKGDR-- 59
Query: 253 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRA 417
V K KA KP + AG S+ V + + A R DL RRA
Sbjct: 60 ILVTTKDGKAGNKPKSMYKKAVMDAGVEASV--VSKAVAA--VRPDLASIASRRA 110
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 41.5 bits (93), Expect = 0.011
Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 1/127 (0%)
Frame = +1
Query: 64 VKMSSSLNWMIIRNNNAFL-VKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 240
V S W + + +NAF FS EP NVT SFR +GL + K + + E+
Sbjct: 5 VPASDDFLWQVTKKHNAFTRASTSGHGARFSAEPGNVTAEVSFRASGLANAKTIDIREHD 64
Query: 241 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRAS 420
KG KPA + + +VK KA R DL KA L R S
Sbjct: 65 GGKG------------KPAATCDGKKLCGSFKSQAGEVKIAAKA---RPDLEKAALARIS 109
Query: 421 AILRSQR 441
AI ++ R
Sbjct: 110 AINKAGR 116
>UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subunit;
n=2; Bacillus|Rep: Type III restriction enzyme, res
subunit - Bacillus coagulans 36D1
Length = 1068
Score = 38.3 bits (85), Expect = 0.11
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 115 FLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKP 294
F++ NIK+ + + V +H R GLI + + + E RKG +++ K T +
Sbjct: 47 FVLAAENIKEAYGT--SQVDRIHMLRREGLIEPELMDIFETLRRKGNQAMHEALKFTTEE 104
Query: 295 AKNLIRRPFK 324
AK L+R F+
Sbjct: 105 AKALLRLAFR 114
>UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=2;
Theileria|Rep: 60S ribosomal protein l28, putative -
Theileria annulata
Length = 150
Score = 37.5 bits (83), Expect = 0.18
Identities = 24/96 (25%), Positives = 49/96 (51%)
Frame = +1
Query: 82 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 261
L W ++RNN+AFL K R FS E +N+ + HS R+ ++ + + V ++ + V
Sbjct: 20 LLWELVRNNHAFLKKSRT--TTFSLESHNLLSKHSPRFT-VLTQFCITFVGYTNKTSYDV 76
Query: 262 VYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLK 369
V + ++ +R + ++ S+ +K+ L+
Sbjct: 77 VLNSTGSLITLKRSNVRNSRRPSSKTSVKSLKKSLE 112
>UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 146
Score = 35.5 bits (78), Expect = 0.74
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 82 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 261
L W +I+ NNA++ K + + F+KE N+ H+ Y+GL+ + + +P +
Sbjct: 27 LVWELIKKNNAYIFKSGH--ETFTKERYNLMARHTPMYSGLMQNSVMNLELSPSGSKIVL 84
Query: 262 VYKKAKATRKP-----AKNLIRRP 318
+ R+P KNL + P
Sbjct: 85 TSMDLQNARQPRNKTQTKNLDKNP 108
>UniRef50_UPI00006CFBC8 Cluster: hypothetical protein
TTHERM_00487140; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00487140 - Tetrahymena
thermophila SB210
Length = 294
Score = 34.3 bits (75), Expect = 1.7
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 76 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVT 174
S L W I++NNNAFLVK + F+ +P +VT
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGV--AFTTDPFSVT 32
>UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 -
Mycoplasma fermentans
Length = 228
Score = 34.3 bits (75), Expect = 1.7
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Frame = +1
Query: 88 WMIIRNNNAFLVKKRNIKKPFSKEP--NNVTNLHSFRYNGLIHKK--AVGVVENPDRKGF 255
WM + N + L+K+ N+K P ++ N+ +F++NG ++++ V V+ N +
Sbjct: 10 WMSLVNKDNLLIKEENLKPKKIVFPLIGSIINVQAFKFNGELYRQWNGVKVLRNTPQHYV 69
Query: 256 TVVYKKAKATRKPAKNLIRRPFKAG--ARRSLYKVKRLLK 369
+Y K K K + R + + S+Y LLK
Sbjct: 70 LFMY-KTKVAETDKKGWVYREYVLWFMPKNSMYNALILLK 108
>UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclin,
N-terminal domain containing protein - Tetrahymena
thermophila SB210
Length = 353
Score = 34.3 bits (75), Expect = 1.7
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 67 KMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNN-VTN-LHSFRYNGLIHKKAVGVVENP 240
K S LNW + N + K+NIK K+ NN +TN L F +N I+K+ + ++E
Sbjct: 36 KKKSYLNWQGCKKINNKQINKQNIKATQIKKKNNQLTNSLLGFSFNQSINKQIIQLLEIN 95
Query: 241 DRKGFTVVYKKAKATRKPAKNL 306
K K + RK K +
Sbjct: 96 KIKEKKKETKNKQIKRKEIKQI 117
>UniRef50_Q6FUT9 Cluster: Candida glabrata strain CBS138 chromosome
F complete sequence; n=1; Candida glabrata|Rep: Candida
glabrata strain CBS138 chromosome F complete sequence -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 310
Score = 34.3 bits (75), Expect = 1.7
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
Frame = +1
Query: 64 VKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPD 243
+ +S L W II + K + + F ++P NVT L + + L + K V E D
Sbjct: 1 MNVSDDLIWDIINHGFCATKIKTKVGQTFDRDPYNVTGLFTRQSCPLANSKYATVREYGD 60
Query: 244 RKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKV-KRLLKANHYRTDLCKATLRRAS 420
+ + K + PAK R ++L ++ + L+ N + CK + S
Sbjct: 61 KGRLYLCIKTPERAHTPAKMWQRIRLSNNYSKALKQIDEHLMYWNKFFLHRCKQRYVKLS 120
Query: 421 AILRSQR 441
I +R
Sbjct: 121 QIKLVER 127
>UniRef50_Q7TPL8 Cluster: RIKEN cDNA A430033K04 gene; n=12;
Murinae|Rep: RIKEN cDNA A430033K04 gene - Mus musculus
(Mouse)
Length = 668
Score = 32.7 bits (71), Expect = 5.2
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Frame = +3
Query: 102 QQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESRWCRGEP*QEGIHSSVQESKG 281
QQ+ CE A K + G CD P L Q QRL ++E + C G+ + H +
Sbjct: 349 QQRPHACERACQAK--EHGEAGCDEPALTQHQRLCTEE-KACEGKACSKAFHHKSLLPQ- 404
Query: 282 YQKAR*KLNPPSIQGWCQEVT-----VQSEEVVKG*PLPHRPMQGYPS-SCFSHPPLPEA 443
YQ AR Q C+E+ V S G P P +P + FSH E
Sbjct: 405 YQSAR----ADEQQSDCKELMKIYFYVSSPTQHHGPPPPEKPFRCNDCLKTFSHKSQLER 460
Query: 444 HQ 449
HQ
Sbjct: 461 HQ 462
>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
Ymf77 - Tetrahymena pigmentosa
Length = 1260
Score = 32.7 bits (71), Expect = 5.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 82 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 246
L W+ + NNN FL K N+K + N+ N + + N I +GV++ D+
Sbjct: 161 LFWIKLNNNNIFLKKNNNLKNLKNLNLKNLKNSINNK-NNFIKINEIGVIDKKDK 214
>UniRef50_A7UG40 Cluster: Membrane protein; n=1; Fibrobacter
succinogenes subsp. succinogenes S85|Rep: Membrane
protein - Fibrobacter succinogenes subsp. succinogenes
S85
Length = 284
Score = 32.3 bits (70), Expect = 6.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 12 LRTHCEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQ 152
+ TH E FG + R+ ++ +++H QQ C E Q+ KA Q
Sbjct: 100 INTHHEKTCFGNQTDNCREGNLLEVVEEHKQQYCASLERDQFSKAKQ 146
>UniRef50_A7NWC3 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 797
Score = 32.3 bits (70), Expect = 6.9
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 160 PNNVTNLHSFRYNGLIHKK-AVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGAR 336
PN +S NGL+ +K + + K F+V A + L R+ G +
Sbjct: 237 PNLAKPKNSLVLNGLVSEKDGLNNTSDTTDKSFSVTGTSQSAAPEEKFGLSRKVHSGGTK 296
Query: 337 R-SLYKVKRLLKANHYRTDLCKATLRRA 417
R S+ + K L +YRT CK + R A
Sbjct: 297 RESMLRQKSLHLEKNYRTYGCKGSSRTA 324
>UniRef50_UPI00006CB1D5 Cluster: hypothetical protein
TTHERM_00300660; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00300660 - Tetrahymena
thermophila SB210
Length = 1262
Score = 31.9 bits (69), Expect = 9.2
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 130 RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRK-PAKNL 306
+NI+KP K+ N +TN ++ + + + K ++ N D FT + + RK K +
Sbjct: 465 KNIEKPIQKQINQITNNYTHQNSMIFSKHSLQQENNNDELNFTQLSQLKGGERKNKMKEI 524
Query: 307 IRRPFKAGARRSL 345
I+ ++R +
Sbjct: 525 IKGTIFINSQRQI 537
>UniRef50_Q4T6N5 Cluster: Chromosome 9 SCAF8684, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 9 SCAF8684, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 966
Score = 31.9 bits (69), Expect = 9.2
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 504 LSAY-KLFRLGCGCLSLFCFDGPLG 433
L AY + R+GC C+ L C+DGP G
Sbjct: 360 LEAYARCLRMGCRCIELDCWDGPEG 384
>UniRef50_Q54RR9 Cluster: Protein kinase, TKL group; n=1;
Dictyostelium discoideum AX4|Rep: Protein kinase, TKL
group - Dictyostelium discoideum AX4
Length = 1761
Score = 31.9 bits (69), Expect = 9.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 75 VVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESR 221
++ L+ HPQQQ IP ++ Q Q+ QQ +Q Q Q+ Q+ +
Sbjct: 10 IIIPLNHHPQQQQIPQQQEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 58
>UniRef50_Q22SL8 Cluster: Leucine Rich Repeat family protein; n=1;
Tetrahymena thermophila SB210|Rep: Leucine Rich Repeat
family protein - Tetrahymena thermophila SB210
Length = 4293
Score = 31.9 bits (69), Expect = 9.2
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 85 NWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 261
N + + N N L+ +N++K ++ NN+ + + NG ++GV NP +
Sbjct: 3326 NPITLNNQNIALLDNQNLEKMSLQQQSNNIVSQTTL-LNGSFSNNSIGVNNNPFSQQERF 3384
Query: 262 VYKKAKATRKPAKNLIRRP 318
+K K T +NL + P
Sbjct: 3385 YFKGVKHTFAQYENLAKLP 3403
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,197,360
Number of Sequences: 1657284
Number of extensions: 10433106
Number of successful extensions: 28927
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 27854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28889
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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