Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H09
(522 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75547-8|CAA99898.1| 126|Caenorhabditis elegans Hypothetical pr... 64 4e-11
Z66565-5|CAA91482.2| 766|Caenorhabditis elegans Hypothetical pr... 31 0.38
U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe chro... 29 2.7
U53151-2|AAN73859.1| 385|Caenorhabditis elegans Serpentine rece... 28 4.7
Z81540-1|CAB04402.1| 186|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81497-8|CAC70080.1| 707|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z75953-7|CAB00101.2| 707|Caenorhabditis elegans Hypothetical pr... 27 6.2
U00181-1|AAA18259.1| 707|Caenorhabditis elegans protein kinase ... 27 6.2
AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical ... 27 6.2
Z22180-5|CAA80174.2| 717|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z75547-8|CAA99898.1| 126|Caenorhabditis elegans Hypothetical
protein R11D1.8 protein.
Length = 126
Score = 64.5 bits (150), Expect = 4e-11
Identities = 47/123 (38%), Positives = 67/123 (54%)
Frame = +1
Query: 70 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 249
MS +L W +IRNN+AFL +R I K FS E N+ ++S +Y+GL +K A+ V + K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58
Query: 250 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 429
G V K K +PAK + ++ + V+RL K N K RRA+AI+
Sbjct: 59 GVVVSTKNEKG--RPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112
Query: 430 RSQ 438
RSQ
Sbjct: 113 RSQ 115
>Z66565-5|CAA91482.2| 766|Caenorhabditis elegans Hypothetical
protein T04F8.6 protein.
Length = 766
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 24 CEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQC 170
CEH+ + I R+N+++ ELD + QQ I EA Y +++ E+C
Sbjct: 275 CEHMQKQIHIANQRRNMLIEELDQN--QQSI---EASYNNRLKEMEERC 318
>U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe
chromosome segregationprotein) homolog protein 1
protein.
Length = 307
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 377 TTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQP 478
+T T R P ++ PSS P GPSK + P P
Sbjct: 213 STIPTNRRAPMLIA-PSSTPAGPSKPTARKPPTP 245
>U53151-2|AAN73859.1| 385|Caenorhabditis elegans Serpentine
receptor, class r protein10 protein.
Length = 385
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 167 LFGSLLNGFLILRFFTRNALLLRMIIQFS 81
L SL+NG I FF N LL +I+ F+
Sbjct: 255 LLWSLINGIYITSFFNSNPLLYSIILGFN 283
>Z81540-1|CAB04402.1| 186|Caenorhabditis elegans Hypothetical
protein F46B3.1 protein.
Length = 186
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 81 TELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDS 209
++ +D Q PCE QYQK + C PP + V + D+
Sbjct: 59 SDTNDECQLDMSPCETDQYQKICPKTCNVC--PPAICVDQWDN 99
>Z81497-8|CAC70080.1| 707|Caenorhabditis elegans Hypothetical
protein F57F5.5 protein.
Length = 707
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 151 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 267
SK P ++H F + ++ K + G V +RKG VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404
>Z75953-7|CAB00101.2| 707|Caenorhabditis elegans Hypothetical
protein F57F5.5 protein.
Length = 707
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 151 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 267
SK P ++H F + ++ K + G V +RKG VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404
>U00181-1|AAA18259.1| 707|Caenorhabditis elegans protein kinase C
protein.
Length = 707
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 151 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 267
SK P ++H F + ++ K + G V +RKG VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404
>AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical
protein T22D1.4 protein.
Length = 586
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 255 ESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFDIALLHK 118
E+ PV+V ++ N V +V +EVSH + E I L+HK
Sbjct: 192 ETKPVKVHYENNSPFVIATIVERFIEVSHWGNIAVEEY--IELVHK 235
>Z22180-5|CAA80174.2| 717|Caenorhabditis elegans Hypothetical
protein K11H3.4 protein.
Length = 717
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 143 FLILRFFTRNALLLRMIIQFSDDDIFTV*TYFYT 42
+L +RFF N L+ M ++ DDDI T FYT
Sbjct: 372 YLTIRFFFENFLIYPMEMEDIDDDI----TVFYT 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,576
Number of Sequences: 27780
Number of extensions: 251294
Number of successful extensions: 673
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -