Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H08
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   111   1e-25
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    29   0.72 
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    26   3.8  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   6.7  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    25   6.7  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   8.9  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  111 bits (266), Expect = 1e-25
 Identities = 52/92 (56%), Positives = 63/92 (68%)
 Frame = +2

Query: 71  PNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTK 250
           PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ K
Sbjct: 10  PNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMK 68

Query: 251 VRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 346
           VRAGRGFTL E++AAG++   A TIGI VD R
Sbjct: 69  VRAGRGFTLEELKAAGVSRRVASTIGIPVDHR 100



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
 Frame = +3

Query: 354 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 530
           N+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A +
Sbjct: 103 NRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVE 161

Query: 531 SXARPITEXEKNFKAYQYLXGARSIAKLVG 620
             A+PITE  KNF A+  L   R+ A+  G
Sbjct: 162 E-AKPITEEAKNFNAFSTLSNERAYARYAG 190


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
 Frame = -1

Query: 427  GNSMRRALYSFIL*TLICNDSTDLLRLXGI------YS-NSNRSGKYWVQSCGPNFTKSE 269
            GN+M  A   F   + +   S   L++ G+      YS NS         S     T   
Sbjct: 1159 GNNMYDATVQFTTSSTMSKKSLSELKILGLSQTYLLYSYNSKVDNISNPGSWTSTVTVQG 1218

Query: 268  SSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 161
            +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1219 TSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +3

Query: 18  LCRGKTPTSKW--ARXIIXYLMDISTRIGKDLL--KLGLTSQLDDTAESKIE 161
           +CRGK P   W     +I  L  +   + +D+L   L   S L D A  KI+
Sbjct: 233 MCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQ 284


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 447 KGEANEEERKLATQLRGPLMPVQQPAPKSXARPITEXE 560
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 268 IHSS*N*GRRIEPSICPNDWNCCRSPXDATSLLNHCKSMFKE 393
           +H S N G  ++P +  N WN      D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 72  LMDISTRIGKDLLKLGLTSQLDDTAES 152
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,342
Number of Sequences: 5004
Number of extensions: 46015
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)