Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H08
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 107 4e-24
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 107 4e-24
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 103 1e-22
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 97 8e-21
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 32 0.36
At5g47070.1 68418.m05800 protein kinase, putative similar to pro... 31 0.62
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate... 29 1.9
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 3.3
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 3.3
At5g12280.1 68418.m01444 hypothetical protein 27 7.7
At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly... 27 7.7
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 107 bits (258), Expect = 4e-24
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +2
Query: 53 KGNNMXPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
K NN+ PNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 233 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 346
++Y+ KVR G+GFTL E++AAG+ A TIGIAVD R
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHR 99
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 354 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 530
N+S+E LQ NVQR+K Y+ +L++FP + +KV G++ EE ATQ++G +P+ + P
Sbjct: 102 NRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPT 161
Query: 531 SXARPITEXEKNFKAYQYLXGARSIAKLVG 620
+T K+FKA+ + R+ + G
Sbjct: 162 MELVKLTSEMKSFKAFDKIRLERTNKRHAG 191
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 107 bits (258), Expect = 4e-24
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +2
Query: 53 KGNNMXPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
K NN+ PNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 233 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 346
++Y+ KVR G+GFTL E++AAG+ A TIGIAVD R
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHR 99
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 354 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 530
N+S+E LQ NVQR+K Y+ +L++FP + +KV G++ EE ATQ++G +P+ + P
Sbjct: 102 NRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPT 161
Query: 531 SXARPITEXEKNFKAYQYLXGARSIAKLVG 620
+T K+FKA+ + R+ + G
Sbjct: 162 MELVKLTSEMKSFKAFDKIRLERTNKRHAG 191
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 103 bits (246), Expect = 1e-22
Identities = 48/98 (48%), Positives = 62/98 (63%)
Frame = +2
Query: 53 KGNNMXPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
K NN+ P+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 233 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 346
++Y+ KVRAG+GFTL E++ AG+ A TIGI+VD R
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHR 99
Score = 64.1 bits (149), Expect = 7e-11
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +3
Query: 354 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 530
N+S+E LQ NVQR+K Y+A+L++FP + ++V G++ EE ATQ++G MP+
Sbjct: 102 NRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAA 161
Query: 531 SXARPITEXEKNFKAYQYLXGARSIAKLVG 620
+T K FKAY + R+ A+ G
Sbjct: 162 MELVKLTADLKAFKAYDKIRLERTNARHAG 191
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 97.1 bits (231), Expect = 8e-21
Identities = 46/96 (47%), Positives = 60/96 (62%)
Frame = +2
Query: 53 KGNNMXPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 232
K NN+ PNGHF K W+ +VKT FNQPA + RR+ R +RP+V T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 233 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVD 340
+ Y+ KVRAG+GFTL E++AAG+ A TIGI+VD
Sbjct: 62 LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVD 97
Score = 57.6 bits (133), Expect = 6e-09
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 354 NKSVESLQINVQRIKEYRARLILFPKGKKVLK-GEANEEERKLATQLRGPLMPVQQPAPK 530
N+S+E Q NVQR+K Y+A+L++FP+ + +K G++ ++E ATQ++ MP+ + P
Sbjct: 102 NRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPT 161
Query: 531 SXARPITEXEKNFKAY 578
+T K F AY
Sbjct: 162 MELVKLTSDMKLFNAY 177
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 321 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 187
+R GF+P A N L L W++ GH+ +G G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159
>At5g47070.1 68418.m05800 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 410
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 429 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSXARPITEXEKNFKAYQY 584
KGK++L+ A E + T P P+P+S TE E+N + + Y
Sbjct: 25 KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 325 WNCCRSPXDATSLLNHCKSMFKE*RNTERVSYCSRKAKRC*RV-RPMKKNVSWLH 486
WNCC K + K +E +++ K K C + RP++KN H
Sbjct: 259 WNCCEDAHSPVDCETVSKWLLKNKDESENMNWILAKTKPCPKCKRPIEKNTGCNH 313
>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
CDPK-related contains TIGRFAM TIGR01557: myb-like
DNA-binding domain, SHAQKYF class; contains Pfam
PF00249: Myb-like DNA-binding domain; similar to CDPK
substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
crystallinum].
Length = 626
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 183 ATALAFFILFCFLRYRRAGWLNQV 112
A L FFI FCF YR +G+L V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 341 DLQQFQSFGQILGSILRP 288
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 341 DLQQFQSFGQILGSILRP 288
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 360 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 458
+V+SL NV +KE + I FP K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394
>At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly
identical to atranbp1b [Arabidopsis thaliana] GI:2058284
Length = 217
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 429 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSXARPITEXEKNFKA 575
K K+V + E +EE K A+ G L + +S +P+ + E+N K+
Sbjct: 154 KFKEVAESEEEKEESKDASDTAGLLEKLTVEEKESEKKPVEKAEENKKS 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,509,222
Number of Sequences: 28952
Number of extensions: 239695
Number of successful extensions: 614
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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