Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H06
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   161   3e-41
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.7  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    24   8.9  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    24   8.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  161 bits (392), Expect = 3e-41
 Identities = 75/129 (58%), Positives = 94/129 (72%)
 Frame = +2

Query: 2   LPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 181
           LPVLAG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII
Sbjct: 206 LPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII 265

Query: 182 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 361
                 K  F                 +V +HH+FTVG+D+DTRAYF++AT++IA+PTGI
Sbjct: 266 -PSLAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGI 324

Query: 362 KIFR*LATI 388
           KIF  LAT+
Sbjct: 325 KIFSWLATL 333


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 211  WLFRNNLCYTSNWVIRIHCLSSSYIH 288
            WLF NN+  ++ W  ++    S+++H
Sbjct: 3959 WLFINNIHLSTPWAEKLPSKMSNHLH 3984


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 72  GSKNDVFKFRSVNNIVIA 19
           GS +D+FK  S+NN ++A
Sbjct: 624 GSFSDIFKRNSINNALLA 641


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 158 ILVKLKYKLQDVQKI-KINVDIKLGLLLQQDQKMMY 54
           + V   +++   Q + K+N+D+ LGL +Q+  K+++
Sbjct: 560 LTVSTAFEIASAQGVGKLNLDLDLGLFVQRLYKIIF 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,145,708
Number of Sequences: 5004
Number of extensions: 20882
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)