Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_H04
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 264 4e-71
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 30 1.2
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 3.8
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 5.0
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 5.0
Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical pr... 28 6.7
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 28 6.7
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 28 6.7
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 27 8.8
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 264 bits (647), Expect = 4e-71
Identities = 129/158 (81%), Positives = 137/158 (86%)
Frame = +2
Query: 179 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 358
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 359 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 538
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 539 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXK 652
G PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVP K
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKK 208
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 384 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 208
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 207 VTGT 196
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 384 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 208
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 207 VTGT 196
+ T
Sbjct: 582 QSNT 585
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 520 TSSNW*NRQLSKDNSASNGSG 458
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 334 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 477
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 334 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 477
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical
protein T08G11.3 protein.
Length = 601
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -2
Query: 637 RRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSG 458
R N ++T N P +T D R S L P +SSN + SK ++ +
Sbjct: 419 RNTNDTSTHSINAPFEGESTNHADFQRKQAEKSKLTRPHSSSNLLSPNASKFDATTTTRA 478
Query: 457 DFLAALHTQ 431
DF+ H +
Sbjct: 479 DFIQKPHVR 487
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 12 CLTCLSEPIVQQWRTLLQPVDVA 80
CLT +E +VQ WR+LL P D +
Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 12 CLTCLSEPIVQQWRTLLQPVDVA 80
CLT +E +VQ WR+LL P D +
Sbjct: 146 CLT--AEKLVQTWRSLLHPTDAS 166
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 440 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 568
+CS E T G ++ GY+G+ +G HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,999,768
Number of Sequences: 27780
Number of extensions: 318594
Number of successful extensions: 1039
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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