Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H03
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   1e-05
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   2.2  
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)                      27   3.8  
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.8  
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                 26   6.6  
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)            26   6.6  
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)                 26   6.6  
SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26)                  26   6.6  
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)                 26   6.6  
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)                  26   6.6  
SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           26   8.8  
SB_19925| Best HMM Match : TUDOR (HMM E-Value=2)                       26   8.8  
SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)          26   8.8  

>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +3

Query: 171 HWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 308
           +WS+KA          MRHLK+V RRF+NGF+EG +    KK VA++
Sbjct: 2   NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEGTQAKSQKKNVAAA 48


>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 819

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 114 CDMTIYHIFCITYGSYFGA 58
           CD +IYHI+ + Y  ++GA
Sbjct: 355 CDSSIYHIYRLKYAVHYGA 373


>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
          Length = 364

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 WISCSKITILPLVSEG*AQEDYWNWPHASF 229
           W++C K+ +LP+ ++      Y  W +  F
Sbjct: 136 WVNCDKVRLLPMRADEVGARVYARWTNGQF 165


>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 WISCSKITILPLVSEG*AQEDYWNWPHASF 229
           W++C K+ +LP+ ++      Y  W +  F
Sbjct: 297 WVNCDKVRLLPMRADEVGARVYARWTNGQF 326


>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +3

Query: 54  GKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMR-HL 230
           G  R KT    +R  R +   QK     CGY  +  RSY  S +            R + 
Sbjct: 31  GAARAKTLAEKQRRNRLATAAQKCSTFTCGYKRSYKRSYKRSYERSYKRGYERSYKRGYK 90

Query: 231 KIVRRRFRNGFKEG 272
           +   R ++ G++ G
Sbjct: 91  RSYERSYKRGYERG 104


>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 179
           R NK    C  CG S    QKS C   G   +   +  HW+
Sbjct: 217 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 257


>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 179
           R NK    C  CG S    QKS C   G   +   +  HW+
Sbjct: 43  RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 83


>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1124

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 238 SGGASVMVLKKGNQRRPRR 294
           S G+ V +L+K N+RRP++
Sbjct: 259 SNGSGVFILQKPNERRPKK 277


>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
          Length = 679

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 179
           R NK    C  CG S    QKS C   G   +   +  HW+
Sbjct: 218 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 258


>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
          Length = 1238

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 179
           R NK    C  CG S    QKS C   G   +   +  HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244


>SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
          Length = 245

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 179
           R NK    C  CG S    QKS C   G   +   +  HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244


>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 179
           R NK    C  CG S    QKS C   G   +   +  HW+
Sbjct: 135 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 175


>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
          Length = 1329

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 179
           R NK    C  CG S    QKS C   G   +   +  HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244


>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
          Length = 1186

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 179
           R NK    C  CG S    QKS C   G   +   +  HW+
Sbjct: 204 RENKQVQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244


>SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 79  RYAEDVVDRHITFKNQNAPNVDILQQNYDPTTGQ*RLSAGRLLELAAC 222
           +Y +D  D   TFK+     ++IL +    T G  ++ AG+  E A C
Sbjct: 423 KYQKDKADHTHTFKHSAGLPLEILAKLCTKTVGSPQIPAGKYTE-AGC 469


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 237 VRRRFRNGFKEGKPTPPKKAV 299
           +R  FR+ ++EGK TP K ++
Sbjct: 510 LREEFRDSYREGKSTPRKFSI 530


>SB_19925| Best HMM Match : TUDOR (HMM E-Value=2)
          Length = 263

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 140 WISCSKITILPLVSEG*AQEDYWNWPHASF 229
           W++C K+ +LP+  +      Y  W +  F
Sbjct: 93  WVNCDKVRLLPMRVDEVGARVYARWTNGQF 122


>SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)
          Length = 481

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 120 FECDMTIYHIFCITYGSYFGAYRSLRYPSSSCHS 19
           FE  +TI  +FC+ Y +Y G  R  R   S C S
Sbjct: 443 FELRLTI--MFCLFYCNYIGIDRQARTHPSRCPS 474


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,380,221
Number of Sequences: 59808
Number of extensions: 192540
Number of successful extensions: 772
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)