Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G23
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1662 + 28447419-28447666,28448429-28448573                       50   1e-06
03_02_0963 - 12769715-12769859,12770639-12770889                       48   5e-06

>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +3

Query: 168 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVAR 308
           ++ F IDC+ P ED I+++ + EK+L+E +KV  GK  NL + V V R
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTR 67



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 313 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 459
           KTKV +T+D  FS                  DWLRV+A+  D   YELRYF
Sbjct: 69  KTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +3

Query: 168 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVAR 308
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  NL   V V+R
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSR 68



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 313 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 459
           KTKV +T+D PFS                  DWLRV+AS  D   YELRYF
Sbjct: 70  KTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,558,547
Number of Sequences: 37544
Number of extensions: 190986
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)