Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G23
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 41  VFVCHNGSN 67
           VFVCHNG N
Sbjct: 805 VFVCHNGMN 813


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 122 SFFASLLMQLGFFSHRFLCYCH 57
           S + S+L  + F   R+L  CH
Sbjct: 124 SSYVSVLTIVAFSMERYLAICH 145


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 327 YHRRHSFFKEVPEVFNKTLPQ 389
           ++R H+F  +V +    TLPQ
Sbjct: 401 FYRWHAFVDDVFQEHKNTLPQ 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,645
Number of Sequences: 438
Number of extensions: 1911
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)