Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G21
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 534 AARHQRCCSDVVRPRSPLHR 475
           AAR +RCC   V P + + +
Sbjct: 609 AARSRRCCYHAVAPGTDIRQ 628


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 534 AARHQRCCSDVVRPRSPLHR 475
           AAR +RCC   V P + + +
Sbjct: 501 AARSRRCCYHAVAPGTDIRQ 520


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 418 NTLTVSLALKHTHTRAREHLPRRCLHTRTHSNTH 317
           N L V         R   HL +R  HTR  + +H
Sbjct: 254 NRLLVLAGTSSPSNRFTRHLIQRRTHTRHTTTSH 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,494
Number of Sequences: 336
Number of extensions: 2801
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)