Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G21
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    29   0.42 
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    29   0.73 
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    25   6.8  
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...    25   9.0  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 169 MSKLKSQNRQFYEQPAC*VS*KKVLQFIVGKFTKRRN*AA-KHRQLHTKWR 20
           +S LK +N++F +  A  +   + L   +GK  K+ N    KH QL TKW+
Sbjct: 537 ISILKQRNQKFLKNNATSIQQIQYLDEELGKTLKQLNDLKEKHAQLQTKWK 587


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -1

Query: 597 SLWQHLAFVHLKRQSRFNICSAARHQRCCSDVVRPRSPLHRHNGIDLTAASAPPGT 430
           S+W      H++RQ  F +    R +    D++      H+H  I   AA   P T
Sbjct: 136 SVWPVSYRKHVQRQDVFTVHELKRIESILEDLINAAGASHKHGEIGCAAAIYDPTT 191


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -1

Query: 342 TLARTQTRTPQKLALHFVVSIRRHVSLSHNRK*AKSNNKDQPRAPITGHSQITNAQ 175
           ++A  Q    Q +  HF+    R+VSL        SNN    R P+T  S+I+N+Q
Sbjct: 118 SVAAAQAALNQDVGQHFIEEEERNVSL--------SNNSSGQRQPLT-ESKISNSQ 164


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 65  KKLSREAPPATYKMADLRNE 6
           KK+S +A   + KMADL+NE
Sbjct: 152 KKMSEQAELESEKMADLKNE 171


>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 341 VQTTSREVLARARVCVFKC**HGESVVRRAVPGGADAAVKSMPLCRWSG 487
           + TT RE++ RA+         G   V+   P G D+ +  + LC  SG
Sbjct: 157 IPTTLRELVQRAKELT------GLQYVQVCAPNGLDSHISKVSLCAGSG 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,344
Number of Sequences: 5004
Number of extensions: 46295
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)